View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0603_high_7 (Length: 418)

Name: NF0603_high_7
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0603_high_7
NF0603_high_7
[»] chr3 (6 HSPs)
chr3 (62-406)||(8714796-8715139)
chr3 (62-406)||(9066683-9067026)
chr3 (316-406)||(8719424-8719514)
chr3 (316-406)||(9071311-9071401)
chr3 (221-377)||(33385260-33385416)
chr3 (104-191)||(33385468-33385553)
[»] chr1 (4 HSPs)
chr1 (210-403)||(17775303-17775496)
chr1 (221-376)||(20421360-20421515)
chr1 (221-254)||(10014561-10014594)
chr1 (260-317)||(17621019-17621076)
[»] scaffold0015 (1 HSPs)
scaffold0015 (270-351)||(61338-61419)
[»] chr6 (1 HSPs)
chr6 (272-348)||(16174087-16174163)
[»] chr8 (3 HSPs)
chr8 (293-403)||(17746968-17747079)
chr8 (144-182)||(11433319-11433357)
chr8 (150-191)||(17747213-17747254)
[»] chr5 (2 HSPs)
chr5 (272-403)||(25663510-25663641)
chr5 (268-336)||(31192050-31192118)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 62 - 406
Target Start/End: Original strand, 8714796 - 8715139
Alignment:
Q  62 attttgaatttcatttttattgtataattacgttcctccaaatgacatggatcaaaatttgatatcatattcccttcatcagtcttgctcttcaattttg 161  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8714796 attttgaatttcatttttattgaataattatgttcctccgaatgacatggatcaaaatttgatatcatattcccttcatcagtctggctcttcaattttg 8714895  T
Q  162 tagtgcccatgagatgcttctaatctcattatgatagtattctaatcattttgaagtatttcttagcacttggtattgttgagattcatgtttaatttga 261  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  8714896 tagtgcccatgagatgcttctaatcttattatga-agttttctaatcattttgaagtctttcttagcatttggtattattgagattcatgtttaatttga 8714994  T
Q  262 tatctacgcatttgtaatatctttttctaacgaacacttgaagaaactttttagagaacaacacatatcagaatcattctgatctttttactttaacgaa 361  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  8714995 tatctacgcatttgtaatatctttttctaacaaacacttgaagaaactttttagagaacaacacatatcagaatcactctgatctcattactttaacgaa 8715094  T
Q  362 gtttgttatctttaaacatcaactttagaagaattttgtgatatt 406  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||    
T  8715095 gtttgttatctttaaacatcaacttaagaagtattttgtgatatt 8715139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 62 - 406
Target Start/End: Original strand, 9066683 - 9067026
Alignment:
Q  62 attttgaatttcatttttattgtataattacgttcctccaaatgacatggatcaaaatttgatatcatattcccttcatcagtcttgctcttcaattttg 161  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9066683 attttgaatttcatttttattgaataattatgttcctccgaatgacatggatcaaaatttgatatcatattcccttcatcagtctggctcttcaattttg 9066782  T
Q  162 tagtgcccatgagatgcttctaatctcattatgatagtattctaatcattttgaagtatttcttagcacttggtattgttgagattcatgtttaatttga 261  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  9066783 tagtgcccatgagatgcttctaatcttattatga-agttttctaatcattttgaagtctttcttagcatttggtattattgagattcatgtttaatttga 9066881  T
Q  262 tatctacgcatttgtaatatctttttctaacgaacacttgaagaaactttttagagaacaacacatatcagaatcattctgatctttttactttaacgaa 361  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  9066882 tatctacgcatttgtaatatctttttctaacaaacacttgaagaaactttttagagaacaacacatatcagaatcactctgatctcattactttaacgaa 9066981  T
Q  362 gtttgttatctttaaacatcaactttagaagaattttgtgatatt 406  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||    
T  9066982 gtttgttatctttaaacatcaacttaagaagtattttgtgatatt 9067026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 316 - 406
Target Start/End: Original strand, 8719424 - 8719514
Alignment:
Q  316 agaacaacacatatcagaatcattctgatctttttactttaacgaagtttgttatctttaaacatcaactttagaagaattttgtgatatt 406  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  8719424 agaacaacacatatcagaattactctgatctctttactttaacgaagtttgttatctttaaacatcaatttaagaagtattttgtgatatt 8719514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 316 - 406
Target Start/End: Original strand, 9071311 - 9071401
Alignment:
Q  316 agaacaacacatatcagaatcattctgatctttttactttaacgaagtttgttatctttaaacatcaactttagaagaattttgtgatatt 406  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  9071311 agaacaacacatatcagaattactctgatctctttactttaacgaagtttgttatctttaaacatcaatttaagaagtattttgtgatatt 9071401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 377
Target Start/End: Complemental strand, 33385416 - 33385260
Alignment:
Q  221 ttcttagcacttggtattgttgagattcatgtttaatttgatatctacgcatttgtaatatctttttctaacgaacacttgaagaaactttttagagaac 320  Q
    |||||||||| |||| |||||||||||| |||||  || ||||| || |||||||||||||| |||||||| || ||||| ||||||||| ||||| |||    
T  33385416 ttcttagcacctggtgttgttgagattcttgtttctttcgatatatatgcatttgtaatatcattttctaaagagcacttaaagaaacttgttagaaaac 33385317  T
Q  321 aacacatatcagaatcattctgatctttttactttaacgaagtttgttatctttaaa 377  Q
    |||| |||| ||||| |   |||||| |||| || ||  |||||||||||| |||||    
T  33385316 aacatatattagaataaccttgatctatttatttcaataaagtttgttatcattaaa 33385260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 33385553 - 33385468
Alignment:
Q  104 tgacatggatcaaaatttgatatcatattcccttcatcagtcttgctcttcaattttgtagtgcccatgagatgcttctaatctcatt 191  Q
    |||||||||||||  | |||| |||||||  ||| || ||||||| |||||||| ||||||||  ||||| |||||||| ||||||||    
T  33385553 tgacatggatcaacttctgatctcatattttcttaatgagtcttgttcttcaatattgtagtg--catgatatgcttctgatctcatt 33385468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 403
Target Start/End: Complemental strand, 17775496 - 17775303
Alignment:
Q  210 ttttgaagtatttcttagcacttggtattgttgagattcatgtttaatttgatatctacgcatttgtaatatctttttctaacgaacacttgaagaaact 309  Q
    |||||||||  ||||||||||||||| ||||| ||||||||||||  || |||||||| |||||| ||||||||  |||||| |||||||  || |||||    
T  17775496 ttttgaagtcattcttagcacttggtgttgttaagattcatgttt-cttggatatctatgcatttttaatatctcattctaaagaacactcaaataaact 17775398  T
Q  310 ttttagagaacaacacatatcagaatcattctgatctttttactttaacgaagtttgttatc-tttaaacatcaactttagaagaattttgtgat 403  Q
    | |||||  |||||| | |||||||| ||  |||||| |||| || ||  ||||||||||||  | |||||||||||| ||||| ||||||||||    
T  17775397 tgttagaccacaacatagatcagaataatattgatctctttaattcaattaagtttgttatcagtaaaacatcaacttaagaaggattttgtgat 17775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 376
Target Start/End: Original strand, 20421360 - 20421515
Alignment:
Q  221 ttcttagcacttggtattgttgagattcatgtttaatttgatatctacgcatttgtaatatctttttctaacgaacacttgaagaaactttttagagaac 320  Q
    |||||| |||||| | ||||||||||||||||||  || ||||| |  ||| |||||||||| | |||||   ||  ||| || |||||| ||| | |||    
T  20421360 ttcttaacacttgatgttgttgagattcatgtttctttagatatttgtgcacttgtaatatcatgttctagaaaatgcttaaaaaaacttgttaaaaaac 20421459  T
Q  321 aacacatatcagaatcattctgatctttttactttaacgaagtttgttatctttaa 376  Q
    ||||||||| ||||||| | |||||| |||| || || ||||||||||||| ||||    
T  20421460 aacacatataagaatcaatttgatctatttatttaaatgaagtttgttatcattaa 20421515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 10014561 - 10014594
Alignment:
Q  221 ttcttagcacttggtattgttgagattcatgttt 254  Q
    ||||||||||||||| ||||||||||||||||||    
T  10014561 ttcttagcacttggtgttgttgagattcatgttt 10014594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 17621076 - 17621019
Alignment:
Q  260 gatatctacgcatttgtaatatctttttctaacgaacacttgaagaaactttttagag 317  Q
    |||||||| |||||||||||||| | |||||||| |||||  ||||||||| ||||||    
T  17621076 gatatctatgcatttgtaatatcatgttctaacggacactcaaagaaacttgttagag 17621019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 61338 - 61419
Alignment:
Q  270 catttgtaatatctttttctaacgaacacttgaagaaactttttagagaacaacacatatcagaatcattctgatcttttta 351  Q
    |||||||||||||||||||||| |||||||| | |||| || ||||| ||||||||||||||||||||||||||||| ||||    
T  61338 catttgtaatatctttttctaaagaacacttaatgaaatttgttagaaaacaacacatatcagaatcattctgatctcttta 61419  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 16174087 - 16174163
Alignment:
Q  272 tttgtaatatctttttctaacgaacacttgaagaaactttttagagaacaacacatatcagaatcattctgatcttt 348  Q
    ||||||||||| | |||||| |||||||  ||||||||| ||||| | |||||||||||| ||||||| ||||||||    
T  16174087 tttgtaatatcatattctaaagaacactcaaagaaacttgttagaaatcaacacatatcataatcattttgatcttt 16174163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 403
Target Start/End: Complemental strand, 17747079 - 17746968
Alignment:
Q  293 gaacacttgaagaaactttttagagaacaacacatatcagaatcattctgatctttttactttaacgaagtttgttatcttt-aaacatcaactttagaa 391  Q
    |||||||| ||| ||||| ||||   ||||||| ||| ||||||||  |||||  |||| || || ||||||||||||| || |||||||||||| ||||    
T  17747079 gaacacttaaagtaacttgttaggtcacaacacttattagaatcatattgatcactttatttcaatgaagtttgttatcattgaaacatcaacttaagaa 17746980  T
Q  392 gaattttgtgat 403  Q
    ||||||||||||    
T  17746979 gaattttgtgat 17746968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 11433357 - 11433319
Alignment:
Q  144 tcttgctcttcaattttgtagtgcccatgagatgcttct 182  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  11433357 tcttgttcttcaattttgtagtgcccatgagatgcttct 11433319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 17747254 - 17747213
Alignment:
Q  150 tcttcaattttgtagtgcccatgagatgcttctaatctcatt 191  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  17747254 tcttcaattttgtaatgcccatgagatgcttctgatctcatt 17747213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 403
Target Start/End: Original strand, 25663510 - 25663641
Alignment:
Q  272 tttgtaatatctttttctaacgaacacttgaagaaactttttagagaacaacacatatcagaatcattctgatctttttactttaacgaagtttgttatc 371  Q
    |||||| |||| ||||| || ||| ||| |||||||||| || ||||||| ||||||| |||| || | || |||||||  |||||  ||||||||||||    
T  25663510 tttgtagtatccttttcgaaagaagactcgaagaaacttattggagaacagcacatattagaagcaatttggtctttttg-tttaattaagtttgttatc 25663608  T
Q  372 tttaaa-catcaactttagaagaattttgtgat 403  Q
     ||||| ||||||||| | ||| ||||||||||    
T  25663609 attaaaacatcaacttaaaaaggattttgtgat 25663641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 31192050 - 31192118
Alignment:
Q  268 cgcatttgtaatatctttttctaacgaacacttgaagaaactttttagagaacaacacatatcagaatc 336  Q
    ||||||||||||||| | |||||| ||| |||  ||||||||| ||| | || ||||||||||||||||    
T  31192050 cgcatttgtaatatcctattctaaagaatactcaaagaaacttcttaaaaaataacacatatcagaatc 31192118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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