View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0603_high_9 (Length: 375)
Name: NF0603_high_9
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 29 - 366
Target Start/End: Complemental strand, 3403733 - 3403396
Alignment:
| Q |
29 |
aattgtaaaggtttaaattcgaacccgaatgaatgtgccaccttgacatctgttaaataagcaacgaaccactttctaagaatcaacatcaaccttagca |
128 |
Q |
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|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
3403733 |
aattgtaaaggtttaaattcgaactcgaatgaaggcgccaccttgacatctgttaaataagcaacaagccactttataagaatcaacatcaaccttagca |
3403634 |
T |
|
| Q |
129 |
acgttatattcaagtaccggagctaattataagtattcaaaaactctccataatatgttgaacaattacccaaaaatttactaaaaccgcatattcattc |
228 |
Q |
| |
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|| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
3403633 |
actttatatccatgtaccggagctaattataagtattcaaaaactctccgtaatatgttgaacaactacccaaaaatttattaaaaccgcatatccattc |
3403534 |
T |
|
| Q |
229 |
tccattttaaccacttttgcgtgagtcatttagatacagagtgacttgaccataacccaataatatttttatgctaggtaaattcagtataaattttatt |
328 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3403533 |
tccattttaaccacttttgcttgagtcatttagatacagagtgacttgaccataacccaataatatttttatgctaggtcaattcagtataaattttatt |
3403434 |
T |
|
| Q |
329 |
tataatatttatagcaatatacagacttgaagaataat |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
3403433 |
tataatatttatagcaatatacagacttgaagaataat |
3403396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 29 - 366
Target Start/End: Original strand, 3443086 - 3443423
Alignment:
| Q |
29 |
aattgtaaaggtttaaattcgaacccgaatgaatgtgccaccttgacatctgttaaataagcaacgaaccactttctaagaatcaacatcaaccttagca |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
3443086 |
aattgtaaaggtttaaattcgaactcgaatgaaggcgccaccttgacatctgttaaataagcaacaagccactttataagaatcaacatcaaccttagca |
3443185 |
T |
|
| Q |
129 |
acgttatattcaagtaccggagctaattataagtattcaaaaactctccataatatgttgaacaattacccaaaaatttactaaaaccgcatattcattc |
228 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
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|
| T |
3443186 |
actttatatccatgtaccggagctaattataagtattcaaaaactctccgtaatatgttgaacaactacccaaaaatttattaaaaccgcatatccattc |
3443285 |
T |
|
| Q |
229 |
tccattttaaccacttttgcgtgagtcatttagatacagagtgacttgaccataacccaataatatttttatgctaggtaaattcagtataaattttatt |
328 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3443286 |
tccattttaaccacttttgcttgagtcatttagatacagagtgacttgaccataacccaataatatttttatgctaggtcaattcagtataaattttatt |
3443385 |
T |
|
| Q |
329 |
tataatatttatagcaatatacagacttgaagaataat |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3443386 |
tataatatttatagcaatatacagacttgaagaataat |
3443423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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