View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_low_12 (Length: 389)
Name: NF0603_low_12
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 23668875 - 23669054
Alignment:
| Q |
30 |
tttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaa-tctgaggattaatttattgaggcatataaacaattatttgaatata |
128 |
Q |
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| T |
23668875 |
tttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaaatctgaggattaatttattgagacatataaacaattatttgaatata |
23668974 |
T |
|
| Q |
129 |
ggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctat |
208 |
Q |
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| T |
23668975 |
ggaacagagagtggtgaaggaacaaattggtttctacatgattgagaaatatgcacataaaagtgttgaaagcttgctat |
23669054 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 5827107 - 5827018
Alignment:
| Q |
85 |
tgaggattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgag |
174 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||| |
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| T |
5827107 |
tgaggattaatttattgagacatatagacaattatttgaatataacaacacagaatggtgaaagaacaaattggtttctacatgattgag |
5827018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 47817838 - 47817657
Alignment:
| Q |
31 |
ttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaa-tctgaggattaatttattgaggcatataaacaattatttgaatatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47817838 |
ttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaaatttgaggattaatttattgagacatataaacaattatttgaatatag |
47817739 |
T |
|
| Q |
130 |
gaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
211 |
Q |
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||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47817738 |
gaacatagagtggtgaatgaacaaataggtttctacatgattgagaaatctgcacataatagtgttgaaagcttgctattgt |
47817657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 237 - 363
Target Start/End: Complemental strand, 22970052 - 22969930
Alignment:
| Q |
237 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaattagaattgtgttagccaattgggccttgggattgggcagttgggctactag |
336 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
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|
| T |
22970052 |
cgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatcagaattgtgttagc----tgggccttgggattgggcagttgggctactgg |
22969957 |
T |
|
| Q |
337 |
atgggagtgtttgatattttagaaatt |
363 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
22969956 |
gtgggagtgtttgatattttagaaatt |
22969930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 26049280 - 26049402
Alignment:
| Q |
85 |
tgaggattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcac |
184 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||||||| || | ||| ||||||| |||||||||| |||||||||||||||||||| ||||| |
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| T |
26049280 |
tgaggattaatttattgagacatatggacagttatttgaatataacaacacagaatggtgaaagaacaaattgttttctacatgattgagaaatttgcac |
26049379 |
T |
|
| Q |
185 |
ataaaagtgttgaaagcttgcta |
207 |
Q |
| |
|
||||||||| | ||||||||| |
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| T |
26049380 |
cgaaaagtgtttatagcttgcta |
26049402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 22962715 - 22962633
Alignment:
| Q |
287 |
agaattgtgttagccaattgggccttgggattgggcagttgggctactagatgggagtgtttgatattttagaaattactaaagcaa |
373 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||| |
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| T |
22962715 |
agaattgtgttagc----tgggctttgggattgggcagttgggctattgggtgagagtgtttgatattttagaaattactaaagcaa |
22962633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 328641 - 328549
Alignment:
| Q |
118 |
atttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
211 |
Q |
| |
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||||||||||| ||| | ||| ||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||| || || |||||| |||||| |
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| T |
328641 |
atttgaatataagaacacagaatggtgaaggaacaaattggattctatatgattgaggaat-tgcaccgaaaagcgtggatagcttgatattgt |
328549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 9369738 - 9369920
Alignment:
| Q |
30 |
tttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaa-tctgaggattaatttattgaggcatataaacaattatttgaatata |
128 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
9369738 |
ttttactcaatagatatgaaaatttgaaaccattctttttaaattcatgcaaaatgtgaggattaatttattgagacatataaacaattatttaaatata |
9369837 |
T |
|
| Q |
129 |
ggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9369838 |
ggaatagagagtggtgaaggaacaaattgatttttacatgattgagaaatatgcacataaaagtgttgaaagcttgctattgt |
9369920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 363
Target Start/End: Original strand, 12587574 - 12587696
Alignment:
| Q |
237 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaattagaattgtgttagccaattgggccttgggattgggcagttgggctactag |
336 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
12587574 |
cgtgattgtaaattgtggatggcgggacctgtgttgtgttggtgtaaatcagaattgtgttagc----tgggccttgggattgggcagttgggctactgg |
12587669 |
T |
|
| Q |
337 |
atgggagtgtttgatattttagaaatt |
363 |
Q |
| |
|
||||| |||||||||||||||||||| |
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|
| T |
12587670 |
gtgggattgtttgatattttagaaatt |
12587696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 237 - 363
Target Start/End: Complemental strand, 6900582 - 6900460
Alignment:
| Q |
237 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaattagaattgtgttagccaattgggccttgggattgggcagttgggctactag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
6900582 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaattgtgtt----aactgggccttgggattgggcagttgggctactga |
6900487 |
T |
|
| Q |
337 |
atgggagtgtttgatattttagaaatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
6900486 |
gtgggagtgtttgatattttagaaatt |
6900460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 237 - 363
Target Start/End: Original strand, 49603125 - 49603247
Alignment:
| Q |
237 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaattagaattgtgttagccaattgggccttgggattgggcagttgggctactag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |
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|
| T |
49603125 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaattgtgttag----ttgggccttgggattgggcagttaggctactgg |
49603220 |
T |
|
| Q |
337 |
atgggagtgtttgatattttagaaatt |
363 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
49603221 |
gtaggagtgtttgatattttagaaatt |
49603247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 237 - 363
Target Start/End: Original strand, 21880573 - 21880695
Alignment:
| Q |
237 |
cgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaattagaattgtgttagccaattgggccttgggattgggcagttgggctactag |
336 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
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|
| T |
21880573 |
cgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatcagaattgtgttagc----tgggccttgggattgggcagttgggctactgg |
21880668 |
T |
|
| Q |
337 |
atgggagtgtttgatattttagaaatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
21880669 |
gtgggagtgtttgatattttagaaatt |
21880695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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