View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0603_low_18 (Length: 322)
Name: NF0603_low_18
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 11531902 - 11532067
Alignment:
| Q |
1 |
ttcatttaagaatggtgattggataaattttagatatgttaacaaattgactgttggtggaggtggtatattgtatggtcaaggatcttctgcttggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11531902 |
ttcatttaagaatggtgattggataaattttagatatgttaacaaattaactgttggtggaggtggtatattgtatggtcaaggatcttctgcttggaaa |
11532001 |
T |
|
| Q |
101 |
actaacgattgcaaaaagaatccaaattgtcactcgctaccaattgtaagttcattttttatacaa |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11532002 |
actaacgattgcaaaaagaattcaaattgtcgctcgctaccaattgtaagttcattttttatacaa |
11532067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 11532104 - 11532161
Alignment:
| Q |
184 |
ttacattttttagcaggctaatcttcgtttctaattgttcattaaaatttgatatatt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
11532104 |
ttacattttttagcaggctaatcttcgttcctaattgttcattaaaattttatatatt |
11532161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 50495994 - 50495920
Alignment:
| Q |
18 |
attggataaattttagatatgttaacaaattgactgttggtggaggtggtatattgtatggtcaaggatcttctg |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
50495994 |
attggataaattttagatatgttaacaaattaactgttggtggaggtggcacattggatggtcaaggatcttctg |
50495920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 13615030 - 13615144
Alignment:
| Q |
18 |
attggataaattttagatatgttaacaaattgactgttggtggaggtggtatattgtatggtcaaggatcttctgcttggaaaactaacgattgcaaaaa |
117 |
Q |
| |
|
||||||| ||||| | | |||||||||| || | ||||||||||| || |||| ||| ||||||| ||| |||||||||| || ||||||||||| |
|
|
| T |
13615030 |
attggatcaatttcaaacatgttaacaagttaatggttggtggaggaggatcattggatgctcaaggagcttatgcttggaaagtgaatgattgcaaaaa |
13615129 |
T |
|
| Q |
118 |
gaatccaaattgtca |
132 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
13615130 |
gaacccaaattgtca |
13615144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 26300366 - 26300479
Alignment:
| Q |
18 |
attggataaattttagatatgttaacaaattgactgttggtggaggtggtatattgtatggtcaaggatcttctgcttggaaaactaacgattgcaaaaa |
117 |
Q |
| |
|
||||||| ||||| | |||||||||||| || | |||||||||||||| |||| ||| ||||||| ||| ||||||||||| || ||||| |||| |
|
|
| T |
26300366 |
attggatcaatttcaaatatgttaacaagttaatggttggtggaggtggatcattggatgctcaaggagcttatgcttggaaaatgaatgattgtcaaaa |
26300465 |
T |
|
| Q |
118 |
gaatccaaattgtc |
131 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
26300466 |
gaacccaaattgtc |
26300479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1089 times since January 2019
Visitors: 3839