View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0603_low_2 (Length: 545)

Name: NF0603_low_2
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0603_low_2
NF0603_low_2
[»] chr6 (13 HSPs)
chr6 (42-532)||(9639274-9639759)
chr6 (179-357)||(9648566-9648744)
chr6 (179-357)||(9654583-9654761)
chr6 (188-357)||(9628482-9628651)
chr6 (160-345)||(9614663-9614848)
chr6 (42-123)||(9649726-9649807)
chr6 (42-123)||(9655743-9655824)
chr6 (459-529)||(9613789-9613859)
chr6 (451-531)||(9627956-9628036)
chr6 (450-532)||(9648310-9648392)
chr6 (450-532)||(9654327-9654409)
chr6 (42-104)||(9615073-9615135)
chr6 (42-106)||(9629639-9629703)
[»] chr7 (1 HSPs)
chr7 (171-356)||(33644474-33644659)


Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 42 - 532
Target Start/End: Complemental strand, 9639759 - 9639274
Alignment:
Q  42 ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctctatctctaaacaaaccaaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9639759 ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctctatctctaaacaaaccaaa 9639660  T
Q  142 gatccataaaatgattcattattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnn 241  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          
T  9639659 gatccctaaaatgattcattattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccaccatttttt 9639560  T
Q  242 nctgacataaataagcagagccaagttcctgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttg 341  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9639559 tctgacataaataagcagagccaagttcctgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttg 9639460  T
Q  342 ctggcatggtaagtcttattagataacatttgttgttaccaaaggcnnnnnnnntgttactaatcaatatctgtgttttacaaggtatttatgttaaaac 441  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||        |||||||    ||||||||||||||||||| |||||||||||||||    
T  9639459 ctggcatggtaagtcttattagataacatttgttgttgccaaaggc-aaaaaaatgttact----aatatctgtgttttacaagatatttatgttaaaac 9639365  T
Q  442 ttgcaggaattatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatct 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9639364 ttgcaggaattatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatct 9639274  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 179 - 357
Target Start/End: Complemental strand, 9648744 - 9648566
Alignment:
Q  179 aatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaaga 278  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||| | || ||| ||       |||| ||||||||||| ||||| |||||||||||||    
T  9648744 aatgcctctcagccaagaattttgatggctatggcaagggacggattgctgccaccatttttttctgatataaataagcacagccatgttcctgtaaaga 9648645  T
Q  279 gtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtct 357  Q
    ||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9648644 gtaccatagttaccggccttgttgctgccgccttggcatttttcatggatgtctctcaacttgctggcatggtaagtct 9648566  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 179 - 357
Target Start/End: Complemental strand, 9654761 - 9654583
Alignment:
Q  179 aatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaaga 278  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||| | || ||| ||       |||| ||||||||||| ||||| |||||||||||||    
T  9654761 aatgcctctcagccaagaattttgatggctatggcaagggacggattgctgccaccatttttttctgatataaataagcacagccatgttcctgtaaaga 9654662  T
Q  279 gtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtct 357  Q
    ||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9654661 gtaccatagttaccggccttgttgctgccgccttggcatttttcatggatgtctctcaacttgctggcatggtaagtct 9654583  T

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Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 188 - 357
Target Start/End: Complemental strand, 9628651 - 9628482
Alignment:
Q  188 cagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcctgtaaagagtaccatag 287  Q
    ||||||||| |||||||||| ||||||||||||||||| || ||| ||       |||| ||||||||||| ||||| |||||||| |||||||||||||    
T  9628651 cagccaagacttttgatggcaatggcaagggatggactactgccaccatttttctctgaaataaataagcacagccatgttcctgttaagagtaccatag 9628552  T
Q  288 ttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtct 357  Q
    | |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  9628551 tcactggccttgttcctgcagccttggcttttttcatggatgtctctcaacttgctgggatggtaagtct 9628482  T

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Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 160 - 345
Target Start/End: Complemental strand, 9614848 - 9614663
Alignment:
Q  160 ttattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcag 259  Q
    ||||| || ||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||  | ||| ||       ||||||||||||||||     
T  9614848 ttattgatatgttttgtttaatgcttctcagccaagaattttgatggctatggcaagggatggactattgccaccatttttttctgacataaataagcac 9614749  T
Q  260 agccaagttcctgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctgg 345  Q
    ||||| |||||||| ||||||||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||    
T  9614748 agccatgttcctgttaagagtaccattgtcactggccttgttcctgcagccttggcatttttcatggatgtctctcaactttctgg 9614663  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 9649807 - 9649726
Alignment:
Q  42 ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctct 123  Q
    |||||||| |||||||| |||||| | || |||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  9649807 ataaatgccggggctatcacagcactttgttcatcattgcttggtggaatgttgcctcaggtaaaactaattggaaccctct 9649726  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 9655824 - 9655743
Alignment:
Q  42 ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctct 123  Q
    |||||||| |||||||| |||||| | || |||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  9655824 ataaatgccggggctatcacagcactttgttcatcattgcttggtggaatgttgcctcaggtaaaactaattggaaccctct 9655743  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 459 - 529
Target Start/End: Complemental strand, 9613859 - 9613789
Alignment:
Q  459 ctaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaata 529  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||    
T  9613859 ctaatgtttattttgcttgtcttctacaggttagtgtaggcactcttattgcattcacaatatcagcaata 9613789  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 451 - 531
Target Start/End: Complemental strand, 9628036 - 9627956
Alignment:
Q  451 ttatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatc 531  Q
    |||||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||||||||||| || || |||||||    
T  9628036 ttatagtactaatgtttattttgtttgtattttacaggttagtgtaggcactcttattgcattcacagtatcagcaatatc 9627956  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 532
Target Start/End: Complemental strand, 9648392 - 9648310
Alignment:
Q  450 attatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatct 532  Q
    ||||||||||||| || || ||||||||| |||||||||||||||| || ||||||||||||||||| || ||| ||||||||    
T  9648392 attatagtactaaagtgtattttgcttgtcttctacaggttagtgttggtactcttcttgcattcaccattgcagcaatatct 9648310  T

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Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 532
Target Start/End: Complemental strand, 9654409 - 9654327
Alignment:
Q  450 attatagtactaatgtttactttgcttgtgttctacaggttagtgtaggcactcttcttgcattcacaatagcatcaatatct 532  Q
    ||||||||||||| || || ||||||||| |||||||||||||||| || ||||||||||||||||| || ||| ||||||||    
T  9654409 attatagtactaaagtgtattttgcttgtcttctacaggttagtgttggtactcttcttgcattcaccattgcagcaatatct 9654327  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 9615135 - 9615073
Alignment:
Q  42 ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggta 104  Q
    ||||||||||||||| |||||||| |||||||||||||||||||   ||||||||||||||||    
T  9615135 ataaatgctggggctcttacagcactatgctcatcattgcttggaacaatgttgccccaggta 9615073  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 9629703 - 9629639
Alignment:
Q  42 ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaa 106  Q
    ||||||||||| ||| |||||||| |||||||| || |||||||   | ||||||||||||||||    
T  9629703 ataaatgctggtgctcttacagcactatgctcagcaatgcttggaacagtgttgccccaggtaaa 9629639  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 356
Target Start/End: Original strand, 33644474 - 33644659
Alignment:
Q  171 ttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccatcannnnnnnctgacataaataagcagagccaagttcc 270  Q
    ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||| || ||| ||        ||||||||||||||| |  | ||||||    
T  33644474 ttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatggactactgccaccatttttttgtgacataaataagcacactctagttcc 33644573  T
Q  271 tgtaaagagtaccatagttactggccttgttgctgcatccttggcctttttcatggatgtctctcaacttgctggcatggtaagtc 356  Q
    ||| ||| | || ||| |||| ||||| | |||||||  ||| || ||||  ||||| |||||| | ||||| || ||||||||||    
T  33644574 tgtcaagggcacaataattaccggcctagctgctgcagtcttagcattttctatggaagtctctgatcttgcagggatggtaagtc 33644659  T

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