View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_low_28 (Length: 279)
Name: NF0603_low_28
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 3572609 - 3572404
Alignment:
| Q |
27 |
cagcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacg |
126 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572609 |
cagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacg |
3572510 |
T |
|
| Q |
127 |
gtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaa |
226 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572509 |
gtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaa |
3572410 |
T |
|
| Q |
227 |
agcttg |
232 |
Q |
| |
|
|||||| |
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|
| T |
3572409 |
agcttg |
3572404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 3575893 - 3575688
Alignment:
| Q |
27 |
cagcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacg |
126 |
Q |
| |
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||||||| || |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3575893 |
cagcagaaagcccagcagtgtcccaaccatagtcaccaggaaattcaccagtgagataagatggagcttcaccagagaatggacccaagtatttgacacg |
3575794 |
T |
|
| Q |
127 |
gtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaa |
226 |
Q |
| |
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|||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||||| |
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| T |
3575793 |
atctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattcttcccatcacaaggtctggagtggaaggggaa |
3575694 |
T |
|
| Q |
227 |
agcttg |
232 |
Q |
| |
|
|||||| |
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| T |
3575693 |
agcttg |
3575688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 3585327 - 3585530
Alignment:
| Q |
29 |
gcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggt |
128 |
Q |
| |
|
||||| || |||||||| ||||| ||||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585327 |
gcagaaagcccagcagtatcccaaccataatcaccaggaaattctcccgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggt |
3585426 |
T |
|
| Q |
129 |
ctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaag |
228 |
Q |
| |
|
|||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |
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| T |
3585427 |
ctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattcttcccatcacaaggtctggagtcgaaggggaaag |
3585526 |
T |
|
| Q |
229 |
cttg |
232 |
Q |
| |
|
|||| |
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|
| T |
3585527 |
cttg |
3585530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 3563914 - 3563741
Alignment:
| Q |
27 |
cagcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacg |
126 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||| ||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
3563914 |
cagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggatggggcttcaccggagaatgggcccaagtacttgacacg |
3563815 |
T |
|
| Q |
127 |
gtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
200 |
Q |
| |
|
||||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| || | |||||||| |
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| T |
3563814 |
gtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactcttccca |
3563741 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 3569562 - 3569389
Alignment:
| Q |
27 |
cagcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacg |
126 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||| || |||||||| || ||||| ||||| |||||||| |||||||| ||||||||||| ||||| |
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|
| T |
3569562 |
cagcagaaagtccagcagtgtcccaaccgtagtcaccagggaattcacctgtgaggtaggatggggcttcaccggagaatgggcccaagtacttcacacg |
3569463 |
T |
|
| Q |
127 |
gtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
200 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| || | |||||||| |
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|
| T |
3569462 |
gtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactcttccca |
3569389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 13275847 - 13275728
Alignment:
| Q |
22 |
tggagcagcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttg |
121 |
Q |
| |
|
|||| ||||||| ||||||||||| | ||| ||||| ||||| || ||||||||||| | ||||||||| || |||||| ||||||| |||| ||||||| |
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| T |
13275847 |
tggatcagcagaaagtccagcagtattccaaccataatcaccagggaattcaccagtcaagtaagatggggcctcaccaaagaatgggcccaggtacttg |
13275748 |
T |
|
| Q |
122 |
acacggtctggaccgtacca |
141 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
13275747 |
acacggtctggaccatacca |
13275728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 38356929 - 38356807
Alignment:
| Q |
27 |
cagcagagagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacg |
126 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| || || || ||||| | |||||| || | |||||||||||||| || |||||||| ||||| |
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|
| T |
38356929 |
cagcagaaagtccagcagtgtcccatccgtagtcacctgggaactctccagtcaagtaagacgggggctcaccagagaatgggcctaagtacttaacacg |
38356830 |
T |
|
| Q |
127 |
gtctggaccgtaccacgggcttc |
149 |
Q |
| |
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|||||| |||||||| ||||||| |
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|
| T |
38356829 |
gtctgggccgtaccatgggcttc |
38356807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 42602716 - 42602621
Alignment:
| Q |
37 |
tccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctgg |
132 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||||| |
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|
| T |
42602716 |
tccagctgtgtcccatccataatcaccaggaaattcaccagtcaagtatgatggaatttgttcagagaatggacccaagtacttgggacggtctgg |
42602621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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