View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_low_30 (Length: 273)
Name: NF0603_low_30
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 9639759 - 9639569
Alignment:
| Q |
42 |
ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctctatctctaaacaaaccaaa |
141 |
Q |
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| T |
9639759 |
ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctctatctctaaacaaaccaaa |
9639660 |
T |
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| Q |
142 |
gatccataaaatgattcattattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctacca |
232 |
Q |
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| T |
9639659 |
gatccctaaaatgattcattattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctacca |
9639569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 9649807 - 9649726
Alignment:
| Q |
42 |
ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctct |
123 |
Q |
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| T |
9649807 |
ataaatgccggggctatcacagcactttgttcatcattgcttggtggaatgttgcctcaggtaaaactaattggaaccctct |
9649726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 9655824 - 9655743
Alignment:
| Q |
42 |
ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaaattaattggaaccctct |
123 |
Q |
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| T |
9655824 |
ataaatgccggggctatcacagcactttgttcatcattgcttggtggaatgttgcctcaggtaaaactaattggaaccctct |
9655743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 9615135 - 9615073
Alignment:
| Q |
42 |
ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggta |
104 |
Q |
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| T |
9615135 |
ataaatgctggggctcttacagcactatgctcatcattgcttggaacaatgttgccccaggta |
9615073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 9614848 - 9614783
Alignment:
| Q |
160 |
ttattcatgtgttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggact |
225 |
Q |
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| T |
9614848 |
ttattgatatgttttgtttaatgcttctcagccaagaattttgatggctatggcaagggatggact |
9614783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 9648744 - 9648704
Alignment:
| Q |
179 |
aatgactcacagccaagaattttgatggctatggcaaggga |
219 |
Q |
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| T |
9648744 |
aatgcctctcagccaagaattttgatggctatggcaaggga |
9648704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 9654761 - 9654721
Alignment:
| Q |
179 |
aatgactcacagccaagaattttgatggctatggcaaggga |
219 |
Q |
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| T |
9654761 |
aatgcctctcagccaagaattttgatggctatggcaaggga |
9654721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 9628651 - 9628614
Alignment:
| Q |
188 |
cagccaagaattttgatggctatggcaagggatggact |
225 |
Q |
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| T |
9628651 |
cagccaagacttttgatggcaatggcaagggatggact |
9628614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 9629703 - 9629639
Alignment:
| Q |
42 |
ataaatgctggggctattacagcattatgctcatcattgcttggtggaatgttgccccaggtaaa |
106 |
Q |
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||||||||||| ||| |||||||| |||||||| || ||||||| | |||||||||||||||| |
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| T |
9629703 |
ataaatgctggtgctcttacagcactatgctcagcaatgcttggaacagtgttgccccaggtaaa |
9629639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 33644474 - 33644528
Alignment:
| Q |
171 |
ttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggact |
225 |
Q |
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||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33644474 |
ttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatggact |
33644528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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