View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0603_low_39 (Length: 253)
Name: NF0603_low_39
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_39 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 50715440 - 50715506
Alignment:
| Q |
187 |
ttcaattatttttcaaatttaaatttacgctataattatagcaaattcgaaaactaacaatatattt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50715440 |
ttcaattatttttcaaatttaaatttacgctataattatagcaaattcgaaaactaacaatatattt |
50715506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 50715283 - 50715367
Alignment:
| Q |
29 |
aacatagctcatacaaatagaatgatacaatatatttgatgtggttaagcgttnnnnnnntcaagttaaaaaataattacttcat |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
50715283 |
aacatagctcatacaaatcgaatgatacaatatgtttgacgtggttaagcgttaaaaaaatcaagttaaaaaatacttacttcat |
50715367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 50715380 - 50715453
Alignment:
| Q |
96 |
aaaaaataattacttcatggtcggccgttgtttttgnnnnnnntaaataacgcttaacaattcaattatttttc |
169 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50715380 |
aaaaaatacttacttcatggtcggacgttgtttttgaaaaaaataaataacgcttaacaattcaattatttttc |
50715453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2692 times since January 2019
Visitors: 3823