View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0603_low_4 (Length: 513)

Name: NF0603_low_4
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0603_low_4
NF0603_low_4
[»] chr4 (9 HSPs)
chr4 (4-321)||(33152362-33152673)
chr4 (404-513)||(33152105-33152214)
chr4 (101-230)||(3684754-3684883)
chr4 (139-230)||(2728602-2728693)
chr4 (318-375)||(33152212-33152269)
chr4 (104-230)||(2933581-2933707)
chr4 (104-232)||(12842304-12842433)
chr4 (104-193)||(4734152-4734241)
chr4 (186-224)||(40262465-40262503)
[»] chr5 (7 HSPs)
chr5 (97-230)||(900904-901037)
chr5 (95-232)||(2250343-2250480)
chr5 (97-231)||(15434431-15434565)
chr5 (130-230)||(30839962-30840062)
chr5 (104-174)||(8317378-8317448)
chr5 (106-208)||(33699997-33700099)
chr5 (101-137)||(30839742-30839778)
[»] chr3 (6 HSPs)
chr3 (100-230)||(26847677-26847807)
chr3 (100-227)||(40034749-40034876)
chr3 (318-476)||(51575984-51576142)
chr3 (101-215)||(2043754-2043870)
chr3 (173-230)||(30074962-30075019)
chr3 (149-225)||(8913926-8914002)
[»] chr2 (16 HSPs)
chr2 (318-502)||(2362652-2362836)
chr2 (100-230)||(33538197-33538327)
chr2 (323-509)||(39493469-39493655)
chr2 (317-513)||(39604278-39604474)
chr2 (318-513)||(39216619-39216814)
chr2 (325-513)||(39099549-39099737)
chr2 (318-513)||(39188779-39188974)
chr2 (325-476)||(39196542-39196693)
chr2 (392-509)||(39144562-39144679)
chr2 (323-476)||(39396682-39396835)
chr2 (104-205)||(24441976-24442077)
chr2 (364-476)||(39138645-39138754)
chr2 (104-174)||(40611590-40611660)
chr2 (323-411)||(39380524-39380612)
chr2 (394-476)||(39126485-39126567)
chr2 (367-476)||(39421257-39421366)
[»] chr7 (5 HSPs)
chr7 (101-230)||(6494766-6494895)
chr7 (97-230)||(38174639-38174772)
chr7 (97-230)||(45849428-45849562)
chr7 (149-230)||(46205831-46205912)
chr7 (113-208)||(22609835-22609930)
[»] chr6 (13 HSPs)
chr6 (99-226)||(29396465-29396592)
chr6 (97-229)||(22995993-22996123)
chr6 (97-229)||(23792277-23792407)
chr6 (97-233)||(18141401-18141537)
chr6 (111-230)||(7045132-7045251)
chr6 (97-182)||(22956998-22957083)
chr6 (97-182)||(23831309-23831394)
chr6 (97-222)||(21203236-21203367)
chr6 (111-230)||(6266427-6266546)
chr6 (104-224)||(9961152-9961272)
chr6 (111-200)||(33423685-33423774)
chr6 (130-208)||(34576170-34576247)
chr6 (105-224)||(33029650-33029769)
[»] chr1 (4 HSPs)
chr1 (101-227)||(9388583-9388709)
chr1 (100-194)||(10366587-10366681)
chr1 (104-208)||(9245811-9245915)
chr1 (104-224)||(26028976-26029096)
[»] chr8 (6 HSPs)
chr8 (105-231)||(43899034-43899161)
chr8 (188-232)||(24512327-24512371)
chr8 (149-209)||(28321032-28321092)
chr8 (130-215)||(38388395-38388479)
chr8 (194-231)||(37819136-37819173)
chr8 (101-145)||(37819894-37819938)
[»] scaffold0227 (1 HSPs)
scaffold0227 (104-224)||(5049-5169)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 33152673 - 33152362
Alignment:
Q  4 tccaacaatatgagtactacagatatatttatacatttgcgaaccacgtgatgtgatgtaaccaattcacttcaaagtgagataaaaatagag-aaccaa 102  Q
    ||||| ||||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||| ||  |     
T  33152673 tccaaaaatatgagtactacagatatatttatacatttgc--------tgatgtaatgtaaccaattcacttcaaagtgagataaaaatagaggaatgat 33152582  T
Q  103 at-tgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtc 201  Q
    || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152581 atgtgaacaaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtc 33152482  T
Q  202 caattttagatgtaaaaataacatagctcataaaaataagtataatggctcagtgtgtagaaagactagtgtctgaacgaaacattcataaattagcata 301  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33152481 caattttagatgtacaaataacatagctcataaaaataagtataatggctcagtgtgtagaaagactagtgtctgaacaaaacattcataaattagcata 33152382  T
Q  302 ccggaaattttatgtgccaa 321  Q
    ||||||||||||||||||||    
T  33152381 ccggaaattttatgtgccaa 33152362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 33152214 - 33152105
Alignment:
Q  404 agtgctagactcattgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattg 503  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152214 agtgctagattcattgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattg 33152115  T
Q  504 cagcattgtc 513  Q
    ||||||||||    
T  33152114 cagcattgtc 33152105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 3684754 - 3684883
Alignment:
Q  101 aaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgt 200  Q
    ||||||||  ||||||||  ||||||||||||||||| ||||||||  |||||| |||||  |||||||||||||| ||||| |||||||||||| || |    
T  3684754 aaattgtaaaaccaacaatatatttgctatttttaataatattttgtctgatttcgatttttgtgctcctcacaaagttaaaggttgttgcattgattat 3684853  T
Q  201 ccaattttagatgtaaaaataacatagctc 230  Q
    ||||||||||||||| | ||||||||||||    
T  3684854 ccaattttagatgtacatataacatagctc 3684883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 2728602 - 2728693
Alignment:
Q  139 atattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttagatgtaaaaataacatagctc 230  Q
    ||||||||| |||||| |||||  |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  2728602 atattttgcttgatttcgatttatgtgctcctcacaaagttaaaggttgttgcattggttgtccaattttaaatgtacaaataacatagctc 2728693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 33152269 - 33152212
Alignment:
Q  318 ccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152269 ccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagt 33152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 2933581 - 2933707
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    |||||| ||||||||||  ||| |||||||| |  || ||||   |||||||||||| || ||||||||||| ||||||| ||||| |||| ||||| ||    
T  2933581 ttgtacaaccaacaactattttactattttttaatatttttttagtgattttgatttgcgcgctcctcacaatattaaaaattgttacattagttgttca 2933680  T
Q  204 attttagatgtaaaaataacatagctc 230  Q
    ||||| | |||| ||||||||| ||||    
T  2933681 attttggttgtacaaataacattgctc 2933707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 12842304 - 12842433
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgca-tgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcc 202  Q
    |||||| ||||||||||| |||||||||||| |  || ||||  | |||||||||||| | || ||||||||| |||||| ||||||| ||| |||||      
T  12842304 ttgtacaaccaacaacttctttgctattttttaatattttttttagtgattttgatttgcatgttcctcacaatattaaaggttgttgtattagttgttg 12842403  T
Q  203 aattttagatgtaaaaataacatagctcat 232  Q
    |||||| | |||| ||||||||| ||||||    
T  12842404 aattttggttgtacaaataacattgctcat 12842433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 4734241 - 4734152
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcat 193  Q
    |||||| ||||||||||  |||||||||||| |  ||  |||   |||||||||||  |||||||||||||| |||||||||||||||||    
T  4734241 ttgtacaaccaacaactattttgctattttttaatattcttttagtgattttgattggcgtgctcctcacaatattaaaagttgttgcat 4734152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 40262465 - 40262503
Alignment:
Q  186 tgttgcattggttgtccaattttagatgtaaaaataaca 224  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  40262465 tgttgcattagttgtccaattttagatgtacaaataaca 40262503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 900904 - 901037
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 196  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  900904 aaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccatgctcctcacaaaattaaaagttgttgcattgg 901003  T
Q  197 ttgtccaattttagatgtaaaaataacatagctc 230  Q
    ||||||||||||||||||| ||||||||||||||    
T  901004 ttgtccaattttagatgtacaaataacatagctc 901037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 2250343 - 2250480
Alignment:
Q  95 agaaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcatt 194  Q
    |||| |||||||||| | |||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||    
T  2250343 agaatcaaattgtacaatcaacaatttatttattatttttaatgatattttgcatgattttgatttccgtactcctcacaaaattaaaaattattgcatt 2250442  T
Q  195 ggttgtccaattttagatgtaaaaataacatagctcat 232  Q
    |||| ||||||||||||| || ||||||||||||||||    
T  2250443 ggttatccaattttagatatacaaataacatagctcat 2250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 15434431 - 15434565
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 196  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| |||||| ||||      
T  15434431 aaccaaattgtacaaccaacaacttatttgctacttttaatgatattttgcttgattttgatttctgtgctcctcataaagttaaaggttgttccattaa 15434530  T
Q  197 ttgtccaattttagatgtaaaaataacatagctca 231  Q
    ||||||| ||||||||||| |||||||| ||||||    
T  15434531 ttgtccacttttagatgtacaaataacacagctca 15434565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 30839962 - 30840062
Alignment:
Q  130 tttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttagatgtaaaaataacatagct 229  Q
    |||||||| ||||||||| |||||| |||||| || ||||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||| ||||||    
T  30839962 tttttaataatattttgcttgatttcgatttctgtactcctcacaaagttaaaggttgttccattgattgtccaattttatatgtacaaataatatagct 30840061  T
Q  230 c 230  Q
    |    
T  30840062 c 30840062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 8317448 - 8317378
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcaca 174  Q
    |||||| ||||||||||| |||||||||||| |  |||||||   |||||||||||| |||||||||||||    
T  8317448 ttgtacaaccaacaacttttttgctattttttaatatatttttactgattttgatttgcgtgctcctcaca 8317378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 33700099 - 33699997
Alignment:
Q  106 gtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaat 205  Q
    |||| ||||||||||  ||||| |||||| |  |||||||  ||||||||||||| |||||| ||||||  || ||| | ||||||||| ||||| ||||    
T  33700099 gtacaaccaacaactcttttgcaattttttaatatatttttaatgattttgatttgcgtgcttctcacattatcaaagggtgttgcattagttgttcaat 33700000  T
Q  206 ttt 208  Q
    |||    
T  33699999 ttt 33699997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 30839742 - 30839778
Alignment:
Q  101 aaattgtacgaccaacaacttatttgctatttttaat 137  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  30839742 aaattgtacgaccaacaatttacttgctatttttaat 30839778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 26847807 - 26847677
Alignment:
Q  100 caaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttg 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26847807 caaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcctcacaaaattaaaagttattgcattggttg 26847708  T
Q  200 tccaattttagatgtaaaaataacatagctc 230  Q
    || ||||||||||||| ||||||||||||||    
T  26847707 tctaattttagatgtacaaataacatagctc 26847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 40034749 - 40034876
Alignment:
Q  100 caaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttg 199  Q
    |||||||||| |||||||||||||||  |||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  40034749 caaattgtacaaccaacaacttatttattatttttaataatattttacatgattttaatttccgtgctcctcataaaattaaaagttgttgcattggttg 40034848  T
Q  200 tccaattttagatgtaaaaataacatag 227  Q
    |||||||||| ||||| |||||||||||    
T  40034849 tccaattttaaatgtacaaataacatag 40034876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 318 - 476
Target Start/End: Complemental strand, 51576142 - 51575984
Alignment:
Q  318 ccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcat 417  Q
    |||| ||||||||||||||||| |||||| |||| ||||||   || ||||||||||||||||| | |||||| ||||||||||| ||  ||||  |||     
T  51576142 ccaatccataaattgacagaaggagcagataaccaagaaccaccacggaattttcagtattttcactaatgtacgctttcaaattgaggactagtttcaa 51576043  T
Q  418 tgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagca 476  Q
    ||| |||||||| ||||||||||| | |||||||||||||||||| |||||||| ||||    
T  51576042 tgcttcttcttgtacatgaggtttgatatgtggtgagattctcattagttgttcaagca 51575984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 2043754 - 2043870
Alignment:
Q  101 aaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagt--tgttgcattggtt 198  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||  |||||| |||||  |||||||| ||||| ||||||||  |||||||||| ||    
T  2043754 aaattgtacaaccaacaacttatttgctatctttaatgatattttgattgatttcgatttatgtgctccttacaaagttaaaagttgtgttgcattgatt 2043853  T
Q  199 gtccaattttagatgta 215  Q
    |||||||||||||||||    
T  2043854 gtccaattttagatgta 2043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 30074962 - 30075019
Alignment:
Q  173 caaaattaaaagttgttgcattggttgtccaattttagatgtaaaaataacatagctc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30074962 caaaattaaaagttgttgcattggttgtccaattttagatgtacaaataacatagctc 30075019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 8913926 - 8914002
Alignment:
Q  149 tgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttagatgtaaaaataacat 225  Q
    |||||| |||||  ||||||||||||| |||||| ||||||||||| ||||| |||||||   |||| |||||||||    
T  8913926 tgatttcgatttgtgtgctcctcacaatattaaaggttgttgcattagttgttcaattttgattgtacaaataacat 8914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 318 - 502
Target Start/End: Complemental strand, 2362836 - 2362652
Alignment:
Q  318 ccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcat 417  Q
    |||| ||||||||||||||||| |||| ||| ||||||||  | || | ||||||||||||||| ||||||||||||||||  |||||||||||  ||||    
T  2362836 ccaatccataaattgacagaaggagcaaaaaccccagaactggcactggattttcagtattttcgccaatgtaagctttcagtttaagtgctagcttcat 2362737  T
Q  418 tgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataatt 502  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  2362736 tgcttcttctcgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcagatcaatgtggtgatcatcaataatt 2362652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 33538197 - 33538327
Alignment:
Q  100 caaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttg 199  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  33538197 caaattgtacaaccaacaacttatttactatttttaatgatattttgcatgattttgatttccgtactcctcacaaaattaaaaattattgcattggttg 33538296  T
Q  200 tccaattttagatgtaaaaataacatagctc 230  Q
    |||||||||| ||||| ||||||||||||||    
T  33538297 tccaattttaaatgtacaaataacatagctc 33538327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 323 - 509
Target Start/End: Original strand, 39493469 - 39493655
Alignment:
Q  323 ccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcattgcat 422  Q
    ||||||||||||||||| || |||||||| ||||||   || |||||||| || ||||  |  |||| |||||||| || |||||||||  ||||||| |    
T  39493469 ccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagcttcattgctt 39493568  T
Q  423 cttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcat 509  Q
    ||||||  ||||||||| ||| || |||||||||| || |||||| |||||||| |  |||||||  ||||||||||||||||||||    
T  39493569 cttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaagaatgtggctatcatcaataattgcagcat 39493655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 513
Target Start/End: Complemental strand, 39604474 - 39604278
Alignment:
Q  317 gccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactca 416  Q
    ||||| ||||||||||||| ||| || ||||||||||||||    ||  ||||||| |||||||| |  |||| || ||||||||||||||||||  |||    
T  39604474 gccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtattttcacttatgttagatttcaaattaagtgctagcttca 39604375  T
Q  417 ttgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtc 513  Q
    |||| ||||||   ||| ||||||||| |||||||  ||||||||||||||||| ||||| |  |||||    ||||||||||||| ||||||||||    
T  39604374 ttgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtttgagcagaagaatgtctctatcatcaataattacagcattgtc 39604278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 513
Target Start/End: Complemental strand, 39216814 - 39216619
Alignment:
Q  318 ccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcat 417  Q
    |||| ||||||||||||| ||| || |||||||| ||||||   | |||||||| ||||||||| |  |||| || |||||||| || ||||||  |||     
T  39216814 ccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaa 39216715  T
Q  418 tgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtc 513  Q
    ||| ||||||   |||  |||||||| ||| ||||||||| ||||||||||||| ||| ||| ||| ||| ||||| |||||||  ||||||||||    
T  39216714 tgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggtaatcagcaataatcacagcattgtc 39216619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 513
Target Start/End: Complemental strand, 39099737 - 39099549
Alignment:
Q  325 ataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcattgcatct 424  Q
    ||||||||||||||| || |||||||| ||||||   || |||||||||||| |||| |  ||  ||| |||||| |||||||| ||  |||| || |||    
T  39099737 ataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtagtttcacttataaaagatttcaacttaagtgccagcttcatcgcttct 39099638  T
Q  425 tcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtc 513  Q
    |||   |||  |||||| | |||||||||||||||||||||||||||||||| |  |||||     |||||||||||| ||||||||||    
T  39099637 tctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcagaagaatgtctctttcatcaataattacagcattgtc 39099549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 513
Target Start/End: Original strand, 39188779 - 39188974
Alignment:
Q  318 ccaacccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcat 417  Q
    |||| ||||||||||| ||||| || |||||||| ||||||   | ||||||| || |||||||    |||| |||||| |||| |||||||||  ||||    
T  39188779 ccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttttaaatcaagtgctagtttcat 39188878  T
Q  418 tgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtc 513  Q
    |||||| |||   |||||||||||||  |  ||||||||||||||||||  |  ||||| |  |||||||  ||||||||||||| || |||||||    
T  39188879 tgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagtactatgagcagaagaatgtggctatcatcaataattacaacattgtc 39188974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 476
Target Start/End: Original strand, 39196542 - 39196693
Alignment:
Q  325 ataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcattgcatct 424  Q
    ||||||||||| ||| |||||||| || ||||||   | ||||||||||||||| ||    |||| ||||||||||| || ||||||  ||| ||| |||    
T  39196542 ataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttct 39196641  T
Q  425 tcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagca 476  Q
    | |  ||||  |||||||| || |||||||||||||||||||||||| ||||    
T  39196642 tttctcacacaaggtttaatatctggtgagattctcatcagttgttccagca 39196693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 509
Target Start/End: Complemental strand, 39144679 - 39144562
Alignment:
Q  392 gctttcaaattaagtgctagactcattgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaat 491  Q
    |||||||||| |||||||||  ||||||| |||||||  ||||||||||||| || | |||||||| || ||||||  | ||||| |  |||||||  ||    
T  39144679 gctttcaaatcaagtgctagcttcattgcttcttcttttacatgaggtttaatatctagtgagattttcctcagttccttgagcagaagaatgtggctat 39144580  T
Q  492 catcaataattgcagcat 509  Q
    ||||||||||| ||||||    
T  39144579 catcaataattacagcat 39144562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 476
Target Start/End: Original strand, 39396682 - 39396835
Alignment:
Q  323 ccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcattgcat 422  Q
    ||||||||||||| ||| | || |||||| ||||||   | |||||||||||||||||| | |||||||||| |||||| | |||||||  ||| ||| |    
T  39396682 ccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgctt 39396781  T
Q  423 cttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagca 476  Q
    |||||   |||  |||| ||| |  |||||||||||||||||||| ||| ||||    
T  39396782 cttctcttacacaaggtctaatagttggtgagattctcatcagttcttctagca 39396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 24441976 - 24442077
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttt-taatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcc 202  Q
    |||||| ||||||||| | ||||||||||| |||| || ||||   |||||| ||||| | |||||||||||| |||||||| ||||||||| |||||||    
T  24441976 ttgtacaaccaacaacctttttgctattttataat-atttttttagtgatttcgatttgcatgctcctcacaatattaaaaggtgttgcattagttgtcc 24442074  T
Q  203 aat 205  Q
    |||    
T  24442075 aat 24442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 476
Target Start/End: Complemental strand, 39138754 - 39138645
Alignment:
Q  364 agaattttcagtattttccccaatgtaagctttcaaattaagtgctagactcattgcatcttcttgcacatgaggtttaacatgtggtgagattctcatc 463  Q
    ||||||||||||||||| |   |||| |||||||| ||||||||||||  ||| ||| ||||||   |||| ||||||||  |  |||||||||||||||    
T  39138754 agaattttcagtatttttc---atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatc 39138658  T
Q  464 agttgttcgagca 476  Q
    |||||||| ||||    
T  39138657 agttgttctagca 39138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 40611590 - 40611660
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcaca 174  Q
    |||||| ||||||||||| |||||||||||| |  |||||||   |||||||||||| |||||||||||||    
T  40611590 ttgtacaaccaacaacttttttgctattttttaatatatttttattgattttgatttgcgtgctcctcaca 40611660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 39380524 - 39380612
Alignment:
Q  323 ccataaattgacagaagtagcagaaaacccagaacctggacagaattttcagtattttccccaatgtaagctttcaaattaagtgctag 411  Q
    ||||||||||||| ||| || ||||| || ||||||   ||||||| ||||||||| || |  |||||||||||||||| |||||||||    
T  39380524 ccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagctttcaaatcaagtgctag 39380612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 476
Target Start/End: Complemental strand, 39126567 - 39126485
Alignment:
Q  394 tttcaaattaagtgctagactcattgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagca 476  Q
    |||||| ||||| |||||  ||||||| ||||||   ||| |||||| || || | |||||||||||||||||||||||||||    
T  39126567 tttcaatttaagagctagcttcattgcttcttctcttacacgaggttcaatatttagtgagattctcatcagttgttcgagca 39126485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 476
Target Start/End: Original strand, 39421257 - 39421366
Alignment:
Q  367 attttcagtattttccccaatgtaagctttcaaattaagtgctagactcattgcatcttcttgcacatgaggtttaacatgtggtgagattctcatcagt 466  Q
    |||||||||||||||  | || | ||||||||||| ||| || ||  ||| ||| |||||||  |||  || ||||| ||||||||||||| ||||||||    
T  39421257 attttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagt 39421356  T
Q  467 tgttcgagca 476  Q
    ||||| ||||    
T  39421357 tgttctagca 39421366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 6494766 - 6494895
Alignment:
Q  101 aaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgt 200  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  6494766 aaattgtacaatcaataacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcttcacaaaattaaaagttgttgcattggttgt 6494865  T
Q  201 ccaattttagatgtaaaaataacatagctc 230  Q
    ||||||||||||||| ||||||||||||||    
T  6494866 ccaattttagatgtacaaataacatagctc 6494895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 38174639 - 38174772
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 196  Q
    ||||||||||||| ||||| |||||| ||| |||||||||| ||||||||| |||||| |||||| |||||||||||||| ||||| |||||||||||||    
T  38174639 aaccaaattgtacaaccaataacttacttgatatttttaataatattttgcttgatttcgatttctgtgctcctcacaaagttaaaggttgttgcattgg 38174738  T
Q  197 ttgtccaattttagatgtaaaaataacatagctc 230  Q
    ||||||||||||||||||| ||||||||||||||    
T  38174739 ttgtccaattttagatgtacaaataacatagctc 38174772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 45849562 - 45849428
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttga-tttccgtgctcctcacaaaattaaaagttgttgcattg 195  Q
    ||||||||||||| ||||| || |||||||||||||||||| ||||||||| ||||||| | |||  ||||||||||||| |||||||||||||||||||    
T  45849562 aaccaaattgtacaaccaataatttatttgctatttttaataatattttgcttgattttcaatttatgtgctcctcacaacattaaaagttgttgcattg 45849463  T
Q  196 gttgtccaattttagatgtaaaaataacatagctc 230  Q
     ||||| ||||||||||||| ||||||||||||||    
T  45849462 attgtcaaattttagatgtacaaataacatagctc 45849428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 46205912 - 46205831
Alignment:
Q  149 tgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttagatgtaaaaataacatagctc 230  Q
    |||||| ||||  |||||||||||||| |||||||| ||||||||| ||||||||||||| | |||| | ||||||| ||||    
T  46205912 tgatttcgattcacgtgctcctcacaatattaaaaggtgttgcattagttgtccaattttggttgtacatataacattgctc 46205831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 22609835 - 22609930
Alignment:
Q  113 caacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaatttt 208  Q
    ||||||||  ||||| ||||||||  |||||||  ||||||||||||| |||||| ||||||  || ||| | ||||||||| ||||| |||||||    
T  22609835 caacaactcttttgcaatttttaaatatatttttaatgattttgatttgcgtgcttctcacattatcaaagggtgttgcattagttgttcaatttt 22609930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 29396465 - 29396592
Alignment:
Q  99 ccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggtt 198  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||  |||||||||||||| ||||| |||||||||||||||    
T  29396465 ccaaattgtacaaccaacaacttatttgctatttttaatgatattttgattgatttcgatttttgtgctcctcacaaagttaaaggttgttgcattggtt 29396564  T
Q  199 gtccaattttagatgtaaaaataacata 226  Q
    ||||||||||||||||| ||||||||||    
T  29396565 gtccaattttagatgtacaaataacata 29396592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 22995993 - 22996123
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 196  Q
    ||||||||||||  |||||||||||  |||||||||||||| ||||||||| |||||| |||||  |||||||||||||| ||||| |||||| ||||||    
T  22995993 aaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctcacaaagttaaaggttgttacattgg 22996090  T
Q  197 ttgtccaattttagatgtaaaaataacatagct 229  Q
    ||||||||||||||||||| |||||||||||||    
T  22996091 ttgtccaattttagatgtacaaataacatagct 22996123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 23792407 - 23792277
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 196  Q
    ||||||||||||  |||||||||||  |||||||||||||| ||||||||| |||||| |||||  |||||||||||||| ||||| |||||| ||||||    
T  23792407 aaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctcacaaagttaaaggttgttacattgg 23792310  T
Q  197 ttgtccaattttagatgtaaaaataacatagct 229  Q
    ||||||||||||||||||| |||||||||||||    
T  23792309 ttgtccaattttagatgtacaaataacatagct 23792277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 18141401 - 18141537
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattgg 196  Q
    |||||||| |||| |||| |||||||||| ||||||||||| ||||||| | |||||| |||||  || ||||||||||| ||||| ||||||| |||||    
T  18141401 aaccaaatcgtacaaccagcaacttattttctatttttaataatattttacttgatttcgatttatgtactcctcacaaagttaaaggttgttgtattgg 18141500  T
Q  197 ttgtccaattttagatgtaaaaataacatagctcata 233  Q
    ||||||||||||| ||||| |||||||||| ||||||    
T  18141501 ttgtccaattttaaatgtacaaataacataactcata 18141537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 7045251 - 7045132
Alignment:
Q  111 accaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttag 210  Q
    |||||||| | |||| ||||||||||  ||||||||  ||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  7045251 accaacaattcatttactatttttaaatatattttgtttgaatttgatttctgtgctcctcacaaacttataagttgttgcattggttgtcaaattttag 7045152  T
Q  211 atgtaaaaataacatagctc 230  Q
     |||| | ||||||||||||    
T  7045151 ttgtacacataacatagctc 7045132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 22956998 - 22957083
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaa 182  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||| | |||||| |||||  ||||||||||||||||||||    
T  22956998 aaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctcacaaaattaaa 22957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 23831394 - 23831309
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaa 182  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||| | |||||| |||||  ||||||||||||||||||||    
T  23831394 aaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctcacaaaattaaa 23831309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 21203367 - 21203236
Alignment:
Q  97 aaccaaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcac------aaaattaaaagttgttg 190  Q
    ||||||||||||| | |||||||||| ||| |||||||||| || |||||| |||||||||||||  || |||| ||      ||| ||||| |||||||    
T  21203367 aaccaaattgtacaatcaacaacttacttgatatttttaataatgttttgcttgattttgatttctatgatccttacaaagttaaagttaaaggttgttg 21203268  T
Q  191 cattggttgtccaattttagatgtaaaaataa 222  Q
    ||||||||||||||||||| ||||| ||||||    
T  21203267 cattggttgtccaattttaaatgtacaaataa 21203236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 6266546 - 6266427
Alignment:
Q  111 accaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttag 210  Q
    ||||||||||  |||||||||||| |  || ||||   |||||| ||||| |||||||||||||| |||||| ||||||| ||  ||||| |||||||||    
T  6266546 accaacaactattttgctattttttaatatttttttagtgatttcgatttgcgtgctcctcacaatattaaaggttgttgtataagttgttcaattttag 6266447  T
Q  211 atgtaaaaataacatagctc 230  Q
     |||| ||||||||| ||||    
T  6266446 ttgtacaaataacattgctc 6266427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 9961272 - 9961152
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    |||||| |||||||||||||||||||||||| |  || |||||  |||||| ||||| |||||| |||||||  ||| | | |||| ||||  |||| ||    
T  9961272 ttgtacaaccaacaacttatttgctattttttaatattttttgattgatttcgatttacgtgcttctcacaatgttatatggtgttacattaattgttca 9961173  T
Q  204 attttagatgtaaaaataaca 224  Q
    ||||||| |||| ||||||||    
T  9961172 attttagttgtacaaataaca 9961152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 33423774 - 33423685
Alignment:
Q  111 accaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgt 200  Q
    |||||||||||| ||||||||||| |  |||||||||   |||| ||||||||  || ||||||||||||  |||||||| |||||||||    
T  33423774 accaacaacttaattgctattttttaatatattttgcccaatttcgatttccgcactactcacaaaattatgagttgttgtattggttgt 33423685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 34576247 - 34576170
Alignment:
Q  130 tttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaatttt 208  Q
    |||||||| |||||||  ||||||||||||| |||||| ||||||  || ||||| ||||||||| ||||| |||||||    
T  34576247 tttttaat-atatttttaatgattttgatttgcgtgcttctcacattatcaaaaggtgttgcattagttgttcaatttt 34576170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 33029650 - 33029769
Alignment:
Q  105 tgtacgaccaacaacttatttgctat-ttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    ||||| ||||||||||||| |||||| ||||||| || |||||  |||||| ||||| | ||||| ||||||  ||| | | |||||| || ||||||||    
T  33029650 tgtacaaccaacaacttatctgctatgttttaat-attttttgattgatttcgatttacatgctcatcacaatgttatatggtgttgcgttagttgtcca 33029748  T
Q  204 attttagatgtaaaaataaca 224  Q
    ||||| | |||| ||||||||    
T  33029749 attttggttgtataaataaca 33029769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 9388583 - 9388709
Alignment:
Q  101 aaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgt 200  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||  |||||| |||||  |||||||||||||||||| | |||||||||||||||||    
T  9388583 aaattgtacaaccaacaacttatttactatttttaatgatattttgtctgatttcgatttatgtgctcctcacaaaattagaggttgttgcattggttgt 9388682  T
Q  201 ccaattttagatgtaaaaataacatag 227  Q
     |||||||||| ||| |||||||||||    
T  9388683 tcaattttagaggtacaaataacatag 9388709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 10366587 - 10366681
Alignment:
Q  100 caaattgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcatt 194  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||   |||||| |||||  |||||||||| ||| ||||| |||||||||||    
T  10366587 caaattgtacaaccaacaacttatttgttatttttaatgatattttatttgatttcgatttatgtgctcctcataaagttaaaggttgttgcatt 10366681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 9245915 - 9245811
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    |||||| ||||||||||  |||||||||||| |  ||  |||  |||||||| |||| ||| | |||||||| |||||||||||||||||  ||||| ||    
T  9245915 ttgtacaaccaacaactattttgctattttttaatattcttttaatgatttttatttgcgtacacctcacaatattaaaagttgttgcataagttgttca 9245816  T
Q  204 atttt 208  Q
    |||||    
T  9245815 atttt 9245811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 26029096 - 26028976
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    |||||| | ||||||||| |||| ||||||| |  |||||||   |||||||||||| |||||||||||||   | |||  |||||| ||  ||||| ||    
T  26029096 ttgtacaagcaacaacttttttgttattttttaatatatttttactgattttgatttgcgtgctcctcacattgtcaaagattgttgtataagttgtaca 26028997  T
Q  204 attttagatgtaaaaataaca 224  Q
    ||||||| |||| ||||||||    
T  26028996 attttagttgtacaaataaca 26028976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 43899034 - 43899161
Alignment:
Q  105 tgtacgaccaacaacttatttgctatttttaatgatattttgcat-gattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    ||||| ||||||||||| |||||||||||| |  || ||||  || ||||||||||| ||||||||| |||  |||||| | ||||||||| ||||| ||    
T  43899034 tgtacaaccaacaacttctttgctattttttaatattttttttattgattttgatttgcgtgctccttacagtattaaagggtgttgcattagttgttca 43899133  T
Q  204 attttagatgtaaaaataacatagctca 231  Q
    ||||| | |||| |||||||||||||||    
T  43899134 attttggttgtacaaataacatagctca 43899161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 24512327 - 24512371
Alignment:
Q  188 ttgcattggttgtccaattttagatgtaaaaataacatagctcat 232  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  24512327 ttgcattggttgtccaattttaaatgtacaaataacatagctcat 24512371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 28321092 - 28321032
Alignment:
Q  149 tgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaatttta 209  Q
    |||||||||||| ||||||||||||||| | ||| ||||||||||  ||||||||||||||    
T  28321092 tgattttgatttgcgtgctcctcacaaagtcaaaggttgttgcataagttgtccaatttta 28321032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 38388395 - 38388479
Alignment:
Q  130 tttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtccaattttagatgta 215  Q
    |||||||| |||||||||  ||||||||||| |||||| ||||||||  || | |||| ||||||||||||| |||||||| ||||    
T  38388395 tttttaat-atattttgctcgattttgatttacgtgcttctcacaaagctataggttgctgcattggttgtctaattttagttgta 38388479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 37819173 - 37819136
Alignment:
Q  194 tggttgtccaattttagatgtaaaaataacatagctca 231  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  37819173 tggttgtccaattttaaatgtacaaataacatagctca 37819136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 37819938 - 37819894
Alignment:
Q  101 aaattgtacgaccaacaacttatttgctatttttaatgatatttt 145  Q
    ||||||||| |||||||| ||||||||||| |||||| |||||||    
T  37819938 aaattgtacaaccaacaatttatttgctatgtttaataatatttt 37819894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 5169 - 5049
Alignment:
Q  104 ttgtacgaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctcacaaaattaaaagttgttgcattggttgtcca 203  Q
    |||||| ||||||||||| ||||| |||||| |  |  ||||  ||||||||||||| |||| |||| |||| || |||  |||||||||   |||||||    
T  5169 ttgtacaaccaacaacttctttgcaattttttaatacttttttaatgattttgatttgcgtgttccttacaatatcaaagattgttgcataaattgtcca 5070  T
Q  204 attttagatgtaaaaataaca 224  Q
    ||||||| |||| | ||||||    
T  5069 attttagttgtacatataaca 5049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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