View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_low_5 (Length: 500)
Name: NF0603_low_5
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 217 - 490
Target Start/End: Original strand, 34140950 - 34141223
Alignment:
| Q |
217 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140950 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
34141049 |
T |
|
| Q |
317 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
416 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34141050 |
caaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaact |
34141149 |
T |
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| Q |
417 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34141150 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
34141223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 217 - 490
Target Start/End: Original strand, 34137287 - 34137560
Alignment:
| Q |
217 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
316 |
Q |
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||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
34137287 |
aaccagttggattgatttcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagact |
34137386 |
T |
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| Q |
317 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
416 |
Q |
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| T |
34137387 |
cgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaact |
34137486 |
T |
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| Q |
417 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
490 |
Q |
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||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
34137487 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
34137560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 217 - 490
Target Start/End: Original strand, 34133376 - 34133649
Alignment:
| Q |
217 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
316 |
Q |
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||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |
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| T |
34133376 |
aaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagact |
34133475 |
T |
|
| Q |
317 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
416 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| || ||| |||||||| ||||||||||||||||| |
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| T |
34133476 |
caaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaact |
34133575 |
T |
|
| Q |
417 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
490 |
Q |
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||| ||| | ||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
34133576 |
gcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttggtctgtg |
34133649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 229 - 490
Target Start/End: Original strand, 34127115 - 34127376
Alignment:
| Q |
229 |
tgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactcc |
328 |
Q |
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||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| | |
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| T |
34127115 |
tgatctcatctctggcaaccttcattttctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctc |
34127214 |
T |
|
| Q |
329 |
atggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaacttcattgtggaat |
428 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| || ||||| |||||||||||| ||| | ||||||||| ||||||| |
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| T |
34127215 |
atggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaat |
34127314 |
T |
|
| Q |
429 |
attggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
490 |
Q |
| |
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||||| ||||| |||||||| ||||| |||| |||||| |||| ||| |||||||||||||| |
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| T |
34127315 |
attggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttggtctgtg |
34127376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 34140342 - 34140418
Alignment:
| Q |
141 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140342 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
34140418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 40333079 - 40333025
Alignment:
| Q |
81 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgtatagcag |
135 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40333079 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcgtgctgtatagcag |
40333025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 48583945 - 48583989
Alignment:
| Q |
95 |
gtgtggctctcgtgtgctgactttgtcttgctgtatagcagcgct |
139 |
Q |
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| T |
48583945 |
gtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct |
48583989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 13066776 - 13066886
Alignment:
| Q |
30 |
atatactataaacaaaagcatcaataaactgaaagaaaactaataatacagcaaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgta |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13066776 |
atatactataaacaaaagcatcaataaactgaaagaaa-ctaataatacaacaaattgtatgttcgtgtggctctcgtgtgctgactttgtcatgctgta |
13066874 |
T |
|
| Q |
130 |
tagcagcgctct |
141 |
Q |
| |
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|||||| ||||| |
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| T |
13066875 |
tagcagtgctct |
13066886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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