View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0603_low_50 (Length: 201)

Name: NF0603_low_50
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0603_low_50
NF0603_low_50
[»] chr5 (1 HSPs)
chr5 (1-144)||(29508276-29508419)
[»] chr3 (2 HSPs)
chr3 (20-142)||(26727221-26727343)
chr3 (2-141)||(8341623-8341762)
[»] scaffold0017 (2 HSPs)
scaffold0017 (9-144)||(173546-173681)
scaffold0017 (2-140)||(168541-168679)
[»] scaffold0061 (1 HSPs)
scaffold0061 (2-140)||(30113-30251)
[»] chr1 (5 HSPs)
chr1 (2-142)||(44611440-44611580)
chr1 (2-126)||(44786005-44786129)
chr1 (2-135)||(35898739-35898872)
chr1 (1-144)||(11545003-11545146)
chr1 (33-141)||(44144599-44144707)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 29508276 - 29508419
Alignment:
Q  1 tgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29508276 tgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttct 29508375  T
Q  101 ttgaatttgaggagtgcatctctctccttctctttacacttcat 144  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  29508376 ttgaatttgaggagtgcatttctctccttctcttcacacttcat 29508419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 26727343 - 26727221
Alignment:
Q  20 actcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctttgaatttgaggagtgcat 119  Q
    |||||| ||||||||||||||||| ||||| | || ||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  26727343 actcccatccatttgcagcaatctgcattttgatcatccttccatgtggacaaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcat 26727244  T
Q  120 ctctctccttctctttacacttc 142  Q
     ||||||| ||||||| ||||||    
T  26727243 gtctctccctctctttgcacttc 26727221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 8341762 - 8341623
Alignment:
Q  2 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 101  Q
    ||||||||||||||| ||| ||| |||||||||||||||||| || ||||  |||||||||||| ||||||||||||||| |||||| ||| ||||| ||    
T  8341762 gtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 8341663  T
Q  102 tgaatttgaggagtgcatctctctccttctctttacactt 141  Q
    ||||  |||||||||| | ||||||| ||||||| |||||    
T  8341662 tgaacgtgaggagtgcgtgtctctccctctctttgcactt 8341623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 173681 - 173546
Alignment:
Q  9 tgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctttgaattt 108  Q
    |||||||| |||||||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||| |||||||||||||||| ||||||  |    
T  173681 tgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataatcatcttgaaggccttgtttgaacgt 173582  T
Q  109 gaggagtgcatctctctccttctctttacacttcat 144  Q
    |||||||||   ||||||  ||||||| ||||||||    
T  173581 gaggagtgcgcgtctctctctctctttgcacttcat 173546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 168679 - 168541
Alignment:
Q  2 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 101  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||||| ||    
T  168679 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt 168580  T
Q  102 tgaatttgaggagtgcatctctctccttctctttacact 140  Q
    | ||  ||| ||||| || ||||||| | ||||| ||||    
T  168579 tcaaagtgacgagtgaatgtctctccctttctttgcact 168541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 30113 - 30251
Alignment:
Q  2 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 101  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||||| ||    
T  30113 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggccttgtt 30212  T
Q  102 tgaatttgaggagtgcatctctctccttctctttacact 140  Q
    | ||  ||| ||||| || ||||||| | ||||| ||||    
T  30213 tcaaagtgacgagtgaatgtctctccctttctttgcact 30251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 44611580 - 44611440
Alignment:
Q  2 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 101  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||| ||   | |||||||||||||||||||| |||||||||||||||||| ||| ||    
T  44611580 gtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacataccatactcatcttgaaggtcttgtt 44611481  T
Q  102 tgaatttgaggagtgcatctctctccttctctttacacttc 142  Q
    | ||  |||||||||||  ||||||| ||||||| ||||||    
T  44611480 taaacgtgaggagtgcacgtctctccctctctttgcacttc 44611440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 44786005 - 44786129
Alignment:
Q  2 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 101  Q
    ||||| ||||||||| ||||||| | ||||||||| |||||| |||||||  |||| ||| ||||||||||||||||||| |||||||||| ||||| ||    
T  44786005 gtttggttgttgcattgaactccttcccatttgcaacaatctgcatttggaccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtt 44786104  T
Q  102 tgaatttgaggagtgcatctctctc 126  Q
    ||||| |||||||||| | ||||||    
T  44786105 tgaatgtgaggagtgcttgtctctc 44786129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 35898872 - 35898739
Alignment:
Q  2 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 101  Q
    ||||| ||||||||| ||||||| |||||||||||||||||| |||||||    || |||||||| |||||||| || ||||| ||||||||||||| ||    
T  35898872 gtttggttgttgcattgaactcctttccatttgcagcaatctgcatttggactatcattccatgtagacaacataccgtactcgtcttgaaggccttgtt 35898773  T
Q  102 tgaatttgaggagtgcatctctctccttctcttt 135  Q
    ||||   |||||| |||| ||||||| |||||||    
T  35898772 tgaaaccgaggagagcatgtctctccctctcttt 35898739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 11545003 - 11545146
Alignment:
Q  1 tgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttct 100  Q
    |||||| |||||||| |||||||| |||||||| || ||||||   ||| | | ||  |||||||| ||||||||| |||||| ||||| ||||  || |    
T  11545003 tgtttggttgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcgacaacatgtcatacttatcttcaaggttttgt 11545102  T
Q  101 ttgaatttgaggagtgcatctctctccttctctttacacttcat 144  Q
    |||||| |||||||||||| ||||||| ||||| | ||||||||    
T  11545103 ttgaatgtgaggagtgcatgtctctccctctctgtgcacttcat 11545146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 44144707 - 44144599
Alignment:
Q  33 tgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctttgaatttgaggagtgcatctctctccttctc 132  Q
    |||||||||||||||| || || ||||||||||| || | || |||||| ||||||||||  |||| ||||||  |||||||||| | ||||||| ||||    
T  44144707 tgcagcaatcttcattaggatcatccttccatgttgaaagcacgccatagtcatcttgaacaccttgtttgaaagtgaggagtgcgtgtctctccctctc 44144608  T
Q  133 tttacactt 141  Q
    ||| |||||    
T  44144607 tttgcactt 44144599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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