View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_low_8 (Length: 445)
Name: NF0603_low_8
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 29 - 441
Target Start/End: Complemental strand, 38301448 - 38301026
Alignment:
| Q |
29 |
acacacttgatgcataactaggtccgagttaggtttctctcacctcacatgactaaaaatatacaataatagacggaaaaactcaaataaattgttaann |
128 |
Q |
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| T |
38301448 |
acacacttgatgcataactaggtccgagttaggtttctctcacctcacatgactaaaaatatacaataatagacggaaaaactcaaacaaattgttactt |
38301349 |
T |
|
| Q |
129 |
nnnnngtttgaatattttcgtcttcaattggaattttttcgaacatgatctcaactcatttgatacagcttaaataacttaattataatcgttatattta |
228 |
Q |
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| T |
38301348 |
tttttgtttgaatctttctgtcttcaattggaattttttcaaacatgatctcaactcatttgatacagcttaaacaacttaattgtaatcgttatattta |
38301249 |
T |
|
| Q |
229 |
atctaatgattaatatatcgctagaaagatatggtacaaaagaatccgagttcaataatactaatataggataaaactagcatcta-----------atg |
317 |
Q |
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| T |
38301248 |
atctaatgatcaatatttggctagaaagacatggtac-aaagaatccgagttcaataatactaatataggataaaactagcatctaatgtcatagacatg |
38301150 |
T |
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| Q |
318 |
tctatgttttaataaaaatatcatgaaagttgggatttgattggcaattatgtaaaagtagttatgagtagtttcaatcataatgaaaaagaacatctat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38301149 |
tctatgttttaataaaaatatcatgaaagttgggatttgattggcaattatgtaaaagtagttatgagtagtttgaatcataatgaaaaagaacatctat |
38301050 |
T |
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| Q |
418 |
tgcatctagccacctatgatacta |
441 |
Q |
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| T |
38301049 |
tgcatctagccacctatggtacta |
38301026 |
T |
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