View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0603_low_9 (Length: 433)
Name: NF0603_low_9
Description: NF0603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0603_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 32845835 - 32846018
Alignment:
| Q |
46 |
caagtttgttgtagatatcgttgttagaatatagaataggtgtaaaactataagtttaagattggatcgacgttcgattgtgaaacatattttaagatct |
145 |
Q |
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| T |
32845835 |
caagtttgttgtagatatcgttgttagaatatagaataggtgtaaaactataagtttaagattggatcgacgttcgattgtgaaacatattttaagatct |
32845934 |
T |
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| Q |
146 |
ataaaactcgattttagnnnnnnnaaaacatattttatgctttgaaaactcataaatttcaagtaaactcaaacctacttattt |
229 |
Q |
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| T |
32845935 |
ataaaactcgattttagtttttttaaaacatattttatgctttgaaaattcataaatttcaagtcaactgaaacctatttattt |
32846018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 231 - 422
Target Start/End: Original strand, 32846154 - 32846345
Alignment:
| Q |
231 |
attaatgtttttggcaaaatgcataacaattaggggtagaaatagatgaactcggttagagtgacatactcctgagcctacttgagatccaaacaaaatc |
330 |
Q |
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| T |
32846154 |
attaatgtttttggcaaaatgcataacaattaggggtggaaatagatgaactcagttaaagtgacatactcctgagcctacttgagatccaaacaaaatc |
32846253 |
T |
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| Q |
331 |
aatttattttcttccaaaaatagacaaggctaagttttttgttttgnnnnnnnnnnnnnntctatttaactaagaagaaagtcagaattcat |
422 |
Q |
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| T |
32846254 |
aatttattttcttccaaaaatagacaaggctaagttttttgttttgaaaaaaaaaaaaaatctatttaactaagaagaaagtcagaattcat |
32846345 |
T |
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