View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0604_high_3 (Length: 615)

Name: NF0604_high_3
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0604_high_3
NF0604_high_3
[»] chr8 (2 HSPs)
chr8 (30-604)||(13137407-13137981)
chr8 (58-112)||(42584556-42584610)
[»] chr6 (2 HSPs)
chr6 (54-112)||(5096027-5096086)
chr6 (115-152)||(30643018-30643055)
[»] chr1 (1 HSPs)
chr1 (58-97)||(43375644-43375683)
[»] chr7 (1 HSPs)
chr7 (115-149)||(7221005-7221039)
[»] chr4 (1 HSPs)
chr4 (115-155)||(26772530-26772570)
[»] chr3 (2 HSPs)
chr3 (70-98)||(33222736-33222764)
chr3 (115-151)||(36764934-36764970)
[»] chr2 (1 HSPs)
chr2 (115-155)||(25834927-25834967)


Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 30 - 604
Target Start/End: Complemental strand, 13137981 - 13137407
Alignment:
Q  30 caaagtagcattaaatattatttaatcaaaatatggttcattatagaacattatgatataatttgatcttgtagccgatcccagtcccacttagcggtgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  13137981 caaagtagcattaaatattatttaatcaaaatatggttcattatagaacattatgacgtaatttgatcttgtaaccgatcccagtcccacttagcggtgt 13137882  T
Q  130 aaggcttggttgttgttgttgtatccctcttatatattgttgagacggagagaaaaataagtgagttagatgacaaattattacaggtagtgtaggaaat 229  Q
    |||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137881 aaggcttaatggttgctgttgtatccctcttatatattgttgagacggagagaaaaataagtgagttagatgacaaattattacaggtagtgtaggaaat 13137782  T
Q  230 agatgaaattgttaatggaaagcagcagaaattaatagattagtttgtgtaaacaaccttataatgactgttaaaaaggaacaaaatgagtactagttca 329  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13137781 agatgaaattgttaatggaaagcagcaaaaattaatagattagtttgtgtaaacaaccttataatgactgttaaaaaggaacaaaatgagtagtagttca 13137682  T
Q  330 attgcccctttgtgtactttgacaaatcactgtttattgcgtttagtggatgattaacgaattgtgacgttacatctgttagccatccattgaatgtaat 429  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137681 attgcccctttgtgtactttgacaaatcactgttaattgtgtttagtggatgattaacgaattgtgacgttacatctgttagccatccattgaatgtaat 13137582  T
Q  430 taaccatgaattttgacaaaccacagttaattgtgtttagtggatgcttaaagaatttactaatgaattttaattttttattggtcttggtccatctcaa 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  13137581 taaccatgaattttgacaaaccacagttaattgtgtttagtggatgcttagaggatttactaatgaattttaattttttattggtcctggtccatctcaa 13137482  T
Q  530 atatgttgatgctgaaaacatctattgtttattgtttatgaaaactgtttctcttttccctttttatcggttcat 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137481 atatgttgatgctgaaaacatctattgtttattgtttatgaaaactgtttctcttttccctttttatcggttcat 13137407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 42584556 - 42584610
Alignment:
Q  58 aaatatggttcattatagaacattatgatataatttgatcttgtagccgatccca 112  Q
    |||||||||| || ||||||||||||||  |||||||||||||||||||| ||||    
T  42584556 aaatatggtttatgatagaacattatgacgtaatttgatcttgtagccgacccca 42584610  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 5096027 - 5096086
Alignment:
Q  54 atcaaaatatggttcattatagaacattatgatataatttgatct-tgtagccgatccca 112  Q
    |||||||||||||| || |||||||||||||   ||||||||||| ||||||||||||||    
T  5096027 atcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatccca 5096086  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 30643018 - 30643055
Alignment:
Q  115 cccacttagcggtgtaaggcttggttgttgttgttgta 152  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  30643018 cccacttagcgggttaaggcttggttgttgttgttgta 30643055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 43375683 - 43375644
Alignment:
Q  58 aaatatggttcattatagaacattatgatataatttgatc 97  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  43375683 aaatatggttcatgatagaacattatgacataatttgatc 43375644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 7221005 - 7221039
Alignment:
Q  115 cccacttagcggtgtaaggcttggttgttgttgtt 149  Q
    ||||||||| |||||||||||||||||||||||||    
T  7221005 cccacttagtggtgtaaggcttggttgttgttgtt 7221039  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 26772570 - 26772530
Alignment:
Q  115 cccacttagcggtgtaaggcttggttgttgttgttgtatcc 155  Q
    ||||||||| ||  |||||||||||||||||||||||||||    
T  26772570 cccacttagtgggataaggcttggttgttgttgttgtatcc 26772530  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 33222736 - 33222764
Alignment:
Q  70 ttatagaacattatgatataatttgatct 98  Q
    |||||||||||||||||||||||||||||    
T  33222736 ttatagaacattatgatataatttgatct 33222764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 36764934 - 36764970
Alignment:
Q  115 cccacttagcggtgtaaggcttggttgttgttgttgt 151  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  36764934 cccacttagtggtataaggcttggttgttgttgttgt 36764970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 25834927 - 25834967
Alignment:
Q  115 cccacttagcggtgtaaggcttggttgttgttgttgtatcc 155  Q
    ||||||||| ||  |||||||||||||||||||||||||||    
T  25834927 cccacttagtgggataaggcttggttgttgttgttgtatcc 25834967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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