View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0604_low_13 (Length: 341)
Name: NF0604_low_13
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 21899313 - 21899187
Alignment:
| Q |
1 |
gattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaa |
100 |
Q |
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| T |
21899313 |
gattcctaaagacaagattttacaaaaatcgcaagattgcaaggaacctgtagactctaaccatgatattgaaggcaagaaaaagattagcgaaggtgaa |
21899214 |
T |
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| Q |
101 |
accgaattagggtcaagagtttctatg |
127 |
Q |
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| T |
21899213 |
accgaattagggtcaagagtttctatg |
21899187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 17663459 - 17663579
Alignment:
| Q |
1 |
gattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaa |
100 |
Q |
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| T |
17663459 |
gattcctaaagacacgatttttcaaacatcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagcgaagatgaa |
17663558 |
T |
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| Q |
101 |
accgaattagggtcaagagtt |
121 |
Q |
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| T |
17663559 |
accgaattagggtcaagagtt |
17663579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 17700520 - 17700400
Alignment:
| Q |
1 |
gattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaa |
100 |
Q |
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| T |
17700520 |
gattcctaaagacacgatttttcaaacatcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagctaagatgaa |
17700421 |
T |
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| Q |
101 |
accgaattagggtcaagagtt |
121 |
Q |
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| T |
17700420 |
accgaattagggtcaagagtt |
17700400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 306
Target Start/End: Complemental strand, 17699996 - 17699894
Alignment:
| Q |
204 |
taataataattggtcttttatttagttgagttgaatgcagaatattttatcttatcactatcattttttggaactttcaatggtggaatctatttttgtg |
303 |
Q |
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||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||| || ||||||||||||| |||||||||||| ||||||| |
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| T |
17699996 |
taataataattgggcttttatttgattgatttgaatgtagaggaatttatcttatcactattatggtttggaactttcagtggtggaatctacttttgtg |
17699897 |
T |
|
| Q |
304 |
aat |
306 |
Q |
| |
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||| |
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| T |
17699896 |
aat |
17699894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 17663968 - 17664067
Alignment:
| Q |
206 |
ataataattggtcttttatttagttgagttgaatgcagaatattttatcttatcactatcattttttggaactttcaatggtggaatctatttttgtgaa |
305 |
Q |
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||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| || || ||||||||| ||||||||| |||||||||||| |
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| T |
17663968 |
ataataattggtcttttatttgattgatttgaatgcagaggtttttatcttatcactattatggttacgaactttcagtggtggaatttatttttgtgaa |
17664067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 341
Target Start/End: Original strand, 17664119 - 17664148
Alignment:
| Q |
312 |
gaacaggtgtgaataattaaaactttagat |
341 |
Q |
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| T |
17664119 |
gaacaggtgtgaataattaaaactttagat |
17664148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 22663773 - 22663717
Alignment:
| Q |
65 |
gatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt |
121 |
Q |
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|||||||||| ||||| || || | ||||||||||||||||||||||||| ||||| |
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| T |
22663773 |
gatattgaagaaaagaagaaaatcaacgaaggtgaaaccgaattagggtcaggagtt |
22663717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 44989859 - 44989761
Alignment:
| Q |
8 |
aaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaat |
107 |
Q |
| |
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||||| |||||||| | || ||||||||||||||||| |||| ||||||||| | |||||||||| |||| ||||||| ||||||||||||| ||| |
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| T |
44989859 |
aaagagaagatttttctaacatcacaagattgcaaggaacctgaaggctctaatcatgatattgaa---tagaagaagattaacgaaggtgaaaccaaat |
44989763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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