View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0604_low_17 (Length: 266)
Name: NF0604_low_17
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 42944458 - 42944256
Alignment:
| Q |
36 |
acaaaaaagattgaatcctggttttctaatcttcacatttaggtgcattgcccaaaaaatttggttcaacattggcacatgtagcattgacaccaactcc |
135 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42944458 |
acaaaaaagatcgaatcctggttttctaagcttcacatttaggtgcattgcccaaaaaatttggttcaacgttggcacatgtagcattgacaccaactcc |
42944359 |
T |
|
| Q |
136 |
attgaatgtgaatctatgttactaagtaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42944358 |
attgaatgtgaatctatgttactaagcaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaa |
42944259 |
T |
|
| Q |
236 |
tat |
238 |
Q |
| |
|
||| |
|
|
| T |
42944258 |
tat |
42944256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 42893711 - 42893510
Alignment:
| Q |
41 |
aaagattgaatcctggttttctaatcttcacatttaggtgcat--tgcccaaaaaatttggttcaacattggcacatgtagcattgacaccaactccatt |
138 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||| || |||||| | |||||||||| | |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42893711 |
aaagattgaatcctagttgtctaagcttcatatgtaggtgtgtgttgcccaaaaattagggtttaacattggcacatgtagcattgacagtaactccatt |
42893612 |
T |
|
| Q |
139 |
gaatgtga-atctatgttactaagtaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaata |
237 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| | ||||| ||| |||||| |||||||||||||| |||||| |||||| || ||||| ||||| |
|
|
| T |
42893611 |
gaatgtgagatctatgttactaagcaccacttcctcatatggtacaccattgctacgaataagaactacacaattttgagtggcaaaaatgcccataata |
42893512 |
T |
|
| Q |
238 |
tt |
239 |
Q |
| |
|
|| |
|
|
| T |
42893511 |
tt |
42893510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 19 times since January 2019
Visitors: 3831