View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0604_low_19 (Length: 250)

Name: NF0604_low_19
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0604_low_19
NF0604_low_19
[»] chr6 (1 HSPs)
chr6 (1-221)||(33701908-33702128)
[»] chr8 (2 HSPs)
chr8 (39-125)||(6094181-6094267)
chr8 (82-128)||(10920251-10920297)
[»] scaffold0063 (1 HSPs)
scaffold0063 (39-125)||(5587-5673)
[»] chr1 (1 HSPs)
chr1 (71-125)||(21171328-21171382)
[»] scaffold0657 (1 HSPs)
scaffold0657 (80-125)||(1051-1096)
[»] chr5 (1 HSPs)
chr5 (48-125)||(17285804-17285881)
[»] chr4 (1 HSPs)
chr4 (80-125)||(26963698-26963743)
[»] chr7 (1 HSPs)
chr7 (81-125)||(12750884-12750928)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33701908 - 33702128
Alignment:
Q  1 taaaacttttgactatgtgttgtaccaaataaaacttctgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcata 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  33701908 taaaacttttgactatgggttgtaccaaataaaacttctgactatagatacttcaaaaataatgtcattttgttcaacggaatctcacgattaaatcata 33702007  T
Q  101 tttaatgtttcattaaacggactaattaaatccctcaagttaacagaacaagttacattagatagatttgctaataacctgatattatcatagcttgaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33702008 tttaatgtttcattaaacggactaattaaatccctcaagttaacagaacaagttacattagatagacttgctaataacctgatattatcatagcttgaac 33702107  T
Q  201 aattggaatacatgtcacatt 221  Q
    |||||||||||||||||||||    
T  33702108 aattggaatacatgtcacatt 33702128  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 6094267 - 6094181
Alignment:
Q  39 tgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    |||||| |||||||| ||||||| | || || |||| ||| ||||||||| ||||| | ||| |||||||| |||||||||||||||    
T  6094267 tgactacagatactttaaaaatagtttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaacggactaa 6094181  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 10920297 - 10920251
Alignment:
Q  82 gtctcacgattaaatcatatttaatgtttcattaaacggactaatta 128  Q
    ||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  10920297 gtctcacgattaactcatacttaatgttccattaaacagactaatta 10920251  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 5673 - 5587
Alignment:
Q  39 tgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    |||||| | |||||| || |||||| || || |||| ||| ||||||||| ||||| | ||| |||||||| |||||||||||||||    
T  5673 tgactacatatactttaagaataatttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaacggactaa 5587  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 21171328 - 21171382
Alignment:
Q  71 tgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    |||||||| ||||||||| ||||| | |||||||||||| ||| |||||||||||    
T  21171328 tgttcaacggggtctcacaattaagttatatttaatgttccatgaaacggactaa 21171382  T

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Target: scaffold0657 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 1096 - 1051
Alignment:
Q  80 gggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    ||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  1096 gggtctcacaattaagttatacttaatgtttcattaaacggactaa 1051  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 17285804 - 17285881
Alignment:
Q  48 atacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    |||||| || ||||||||||||| ||| |  ||||| |||||||||| ||| | |||||||| |||||||| ||||||    
T  17285804 atactttaagaataatgtcatttagtttactagggtttcacgattaagtcacacttaatgttccattaaacagactaa 17285881  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 26963743 - 26963698
Alignment:
Q  80 gggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    ||||||||| ||||| | |||||||||||| |||||||||||||||    
T  26963743 gggtctcacaattaagttatatttaatgttccattaaacggactaa 26963698  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 12750928 - 12750884
Alignment:
Q  81 ggtctcacgattaaatcatatttaatgtttcattaaacggactaa 125  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  12750928 ggtctcacaattaagttatacttaatgtttcattaaacggactaa 12750884  T

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