View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0604_low_2 (Length: 707)
Name: NF0604_low_2
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 77 - 678
Target Start/End: Original strand, 33421031 - 33421642
Alignment:
| Q |
77 |
cataggttcgaacttgtgtttcaatacattaaatatttatatagttcggtggttattcttgaaagtgtaaagatataattttgtgtcaaaaaagaaaagt |
176 |
Q |
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| T |
33421031 |
cataggttcgaacttgtgtttcaatacatcaaatatttatatagttcggtggttattcttgaaagtgtaaagatata-ttttgtgtcaaaaaagaaaagt |
33421129 |
T |
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| Q |
177 |
gtaaagacatatttaaaaggtgcggatgtatctttaataattgtgtagccnnnnnnngaaagaaagaaagaacgttcggtttagaccttggatacaagga |
276 |
Q |
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| T |
33421130 |
gtaaagacatatttaaaaggtgcggatgtatctttaataatcgtgtagcctttttttaaaagaaagaaagaacgttcagtttagaccttgaatacaagga |
33421229 |
T |
|
| Q |
277 |
ttgatcaagatttaatttggggagaaattatcaaacatatttaggagaatctgagtttgatcccaatagaataattttttactagttttacttatcttct |
376 |
Q |
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| T |
33421230 |
ttgaccaagatttaatttggggagaaattatcaaacatatttaggagaatctgagtttgatcccgatagaataattttttactagttttacttaccttct |
33421329 |
T |
|
| Q |
377 |
gaacgaattttaaatcaccatcatgacctcttggaaccacgggatt-nnnnnnnnnnnttataaccaaacaattatagtagaaaataatcaattataaaa |
475 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33421330 |
gaacgaattttaaatcac---catgacctcttggaaccacgggattaacaagaaaaaattataaccaaacaattatagtaaaaaataatcaattataaaa |
33421426 |
T |
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| Q |
476 |
ctaaatttattttatttcactgatcgagagatgtagttagctccaaataatttaagagaccaa--------------tcaaaaacattagaaaatagcag |
561 |
Q |
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| T |
33421427 |
ctaaatttattttatttcactgatcgagagatgtagttagctccaaataatttaagagaccaatcaaaattattaagtcaaaaacattagaaaatagcag |
33421526 |
T |
|
| Q |
562 |
caacnnnnnnntaataccaacacgtgcataaaacaattgaataannnnnnnnnncaatatttaaatttgacgtctatttatattcacactagttaggcaa |
661 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33421527 |
caacaaaaaaataataccaacacgtgcataaaacaattgaataa-tttttttttcaatatttaaatttgacgtctatttatattcacactagttaggcaa |
33421625 |
T |
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| Q |
662 |
gtacagaaagtgaaaga |
678 |
Q |
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||||||||||||||||| |
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| T |
33421626 |
gtacagaaagtgaaaga |
33421642 |
T |
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