View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0604_low_20 (Length: 246)
Name: NF0604_low_20
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 13137981 - 13137765
Alignment:
| Q |
30 |
caaagtagcattaaatattatttaatcaaaatatggttcattatagaacattatgatataatttgatcttgtagccgatcccagtcccacttagcggtgt |
129 |
Q |
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| T |
13137981 |
caaagtagcattaaatattatttaatcaaaatatggttcattatagaacattatgacgtaatttgatcttgtaaccgatcccagtcccacttagcggtgt |
13137882 |
T |
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| Q |
130 |
aaggcttggttgttgttgttgtatccctcttatatattgttgagacggagagaaaaataagtgagttagatgacaaattattacaggtagtgaaggaaat |
229 |
Q |
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||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13137881 |
aaggcttaatggttgctgttgtatccctcttatatattgttgagacggagagaaaaataagtgagttagatgacaaattattacaggtagtgtaggaaat |
13137782 |
T |
|
| Q |
230 |
agatgcaattgttaatg |
246 |
Q |
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||||| ||||||||||| |
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| T |
13137781 |
agatgaaattgttaatg |
13137765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 42584556 - 42584610
Alignment:
| Q |
58 |
aaatatggttcattatagaacattatgatataatttgatcttgtagccgatccca |
112 |
Q |
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| T |
42584556 |
aaatatggtttatgatagaacattatgacgtaatttgatcttgtagccgacccca |
42584610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 5096027 - 5096086
Alignment:
| Q |
54 |
atcaaaatatggttcattatagaacattatgatataatttgatct-tgtagccgatccca |
112 |
Q |
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| T |
5096027 |
atcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatccca |
5096086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 30643018 - 30643055
Alignment:
| Q |
115 |
cccacttagcggtgtaaggcttggttgttgttgttgta |
152 |
Q |
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| T |
30643018 |
cccacttagcgggttaaggcttggttgttgttgttgta |
30643055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 43375683 - 43375644
Alignment:
| Q |
58 |
aaatatggttcattatagaacattatgatataatttgatc |
97 |
Q |
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| T |
43375683 |
aaatatggttcatgatagaacattatgacataatttgatc |
43375644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 7221005 - 7221039
Alignment:
| Q |
115 |
cccacttagcggtgtaaggcttggttgttgttgtt |
149 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
7221005 |
cccacttagtggtgtaaggcttggttgttgttgtt |
7221039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 26772570 - 26772530
Alignment:
| Q |
115 |
cccacttagcggtgtaaggcttggttgttgttgttgtatcc |
155 |
Q |
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| T |
26772570 |
cccacttagtgggataaggcttggttgttgttgttgtatcc |
26772530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 33222736 - 33222764
Alignment:
| Q |
70 |
ttatagaacattatgatataatttgatct |
98 |
Q |
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| T |
33222736 |
ttatagaacattatgatataatttgatct |
33222764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 36764934 - 36764970
Alignment:
| Q |
115 |
cccacttagcggtgtaaggcttggttgttgttgttgt |
151 |
Q |
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||||||||| ||| ||||||||||||||||||||||| |
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| T |
36764934 |
cccacttagtggtataaggcttggttgttgttgttgt |
36764970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 25834927 - 25834967
Alignment:
| Q |
115 |
cccacttagcggtgtaaggcttggttgttgttgttgtatcc |
155 |
Q |
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||||||||| || ||||||||||||||||||||||||||| |
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| T |
25834927 |
cccacttagtgggataaggcttggttgttgttgttgtatcc |
25834967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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