View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0604_low_4 (Length: 605)
Name: NF0604_low_4
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 258 - 596
Target Start/End: Original strand, 36093620 - 36093958
Alignment:
| Q |
258 |
gtgttacactgtcactcatgttccaccattgaacaaatagttaataagagcttcttccccaccacctaaatttcttaaaaatcacacgcgcgcccggaag |
357 |
Q |
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| T |
36093620 |
gtgttacactgtcactcatgttccaccattgaacaaatagttaataagagcttcttccccaccacctaaatttcttaaaaatcacacgcatgcccggaag |
36093719 |
T |
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| Q |
358 |
tatactttcagacgggtaaaaactgtgtttttgtccaaaaatatgggcaaagaaacagtgttaatatcctcacaaaggaattgtctaacttcaaattata |
457 |
Q |
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| T |
36093720 |
tatactttcagacaggtaaaaactgtgtttttgtccaaaaatatgggcaaagaaacagtgttaatatcctcacaaaggaattgtctaacttcaaattata |
36093819 |
T |
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| Q |
458 |
ttctattcaagaaatactcagagtgttgtctatgggcaaagaaacagtgttaatatccctgagtttgagagggaaataaatcaaatataggagtatgtat |
557 |
Q |
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| T |
36093820 |
ttctattcaagaaatactcagagtgttgtctatgggcaaagaaacagtgttaatatccctgagtttgagagggaaataaatcaaatataggagtatgtat |
36093919 |
T |
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| Q |
558 |
gatactcctccccttctccgttgcatctctcagaataat |
596 |
Q |
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| T |
36093920 |
gatactcctccccttctcagttgcatctctcagaataat |
36093958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 36093372 - 36093531
Alignment:
| Q |
103 |
ggaatctcaaatttaagctctttgcatctttcttgatccaaatttgatttcatcataatctcagaagcaaactttgtgttagcagagaaaag--nnnnnn |
200 |
Q |
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| T |
36093372 |
ggaatctcaaatttaagctctttgtatctttcttgatccaaatttgatttcatcataatctcagaagcaaactttgtgttagcagagaaaagaaaaaaat |
36093471 |
T |
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| Q |
201 |
nnntattgcaatctggctctcactacaacttcctttcactgcaccgctgatcattttgtg |
260 |
Q |
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| T |
36093472 |
atatattgcagtctggctctcactacaacttcctttcactgcaccgctgatcattttgtg |
36093531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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