View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0604_low_5 (Length: 567)
Name: NF0604_low_5
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_5 |
 | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0566 (1 HSPs) |
| | |
|
| [»] scaffold0624 (1 HSPs) |
| | |
|
| [»] scaffold0106 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 59 - 539
Target Start/End: Original strand, 7506355 - 7506835
Alignment:
| Q |
59 |
gatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcaca |
158 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7506355 |
gatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcaca |
7506454 |
T |
|
| Q |
159 |
tcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagag |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7506455 |
tcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagag |
7506554 |
T |
|
| Q |
259 |
aatttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgag |
358 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7506555 |
aatttttaattttacaaatcgcactcctgagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaataagttattggaagagatgag |
7506654 |
T |
|
| Q |
359 |
gagaagaaagagttgatagagttgttgtttaacaccggcaacaatcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatga |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
7506655 |
gagaagaaagagttgatagagttgttgtttaacaccggcaacaatcactacaccatttatcctttttaacaacaatcaaaaaatgttgtcagaactatga |
7506754 |
T |
|
| Q |
459 |
aaaacatcccctaaaagtataggggacgttttctgggcgactcctatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7506755 |
aaaacgtcccctaaaggtataggggacgttttctgggcgactcctatacgagcgtcgcctatagtctatggggacgttttt |
7506835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 7481632 - 7482033
Alignment:
| Q |
2 |
gaggaggagcagagagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaaca |
101 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7481632 |
gaggagcagcagggaaccaacaaccatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaaca |
7481731 |
T |
|
| Q |
102 |
ccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaat |
201 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7481732 |
ctgaagacttgaggcgacaagtcatgaccagtaacaagaaggctaaaaagttttacatcttcttctcatcatccaaccagcttctcttttcttacaaaat |
7481831 |
T |
|
| Q |
202 |
ggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttg |
301 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
7481832 |
ggttcagaaaattaaggaacttagtaagagaattgaggctcttaatgttggtcagagaatttttaattttacaaatcgtacacctgagcaacgagttttg |
7481931 |
T |
|
| Q |
302 |
aaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaaca |
401 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7481932 |
aaacaacgagaaactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaaca |
7482031 |
T |
|
| Q |
402 |
at |
403 |
Q |
| |
|
|| |
|
|
| T |
7482032 |
at |
7482033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Complemental strand, 7129506 - 7129105
Alignment:
| Q |
2 |
gaggaggagcagagagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaaca |
101 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7129506 |
gaggagcagcagggagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaaca |
7129407 |
T |
|
| Q |
102 |
ccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7129406 |
ccgaagacttgaggcgacaagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaat |
7129307 |
T |
|
| Q |
202 |
ggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttg |
301 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
7129306 |
ggttcagaaaattaaggaacttagtaagagaattgaggcccttaattttgataagagagtctttaattttacaaatcgcgcacctgagcaacgagttttg |
7129207 |
T |
|
| Q |
302 |
aaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaaca |
401 |
Q |
| |
|
| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7129206 |
agagaaagagaaactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagttgttgtttaacaccggcaaca |
7129107 |
T |
|
| Q |
402 |
at |
403 |
Q |
| |
|
|| |
|
|
| T |
7129106 |
at |
7129105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 2 - 403
Target Start/End: Complemental strand, 7722780 - 7722379
Alignment:
| Q |
2 |
gaggaggagcagagagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaaca |
101 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7722780 |
gaggagcagcagggaaccaacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaaca |
7722681 |
T |
|
| Q |
102 |
ccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaat |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7722680 |
ctgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttttgcatcttcttctcatcatccaaccaacttctcttttcatacaaaat |
7722581 |
T |
|
| Q |
202 |
ggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttg |
301 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
7722580 |
ggttcagaaaattaaggaacttagtaagagaattgaggcccttaatattgataagagaagttttaattttacaaatcgcacacctgagcaacgagttttg |
7722481 |
T |
|
| Q |
302 |
aaacaaagagaaactcactcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaaca |
401 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7722480 |
agacaaagagaaactcattcttttattcgcgaggaagaagttattggaagagataaggagaagaaagagctgatagagttgttgtttaacaccggcaaca |
7722381 |
T |
|
| Q |
402 |
at |
403 |
Q |
| |
|
|| |
|
|
| T |
7722380 |
at |
7722379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 7494050 - 7494435
Alignment:
| Q |
18 |
ccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
7494050 |
ccaacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcg |
7494149 |
T |
|
| Q |
118 |
acaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaat |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494150 |
acaggtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaag |
7494249 |
T |
|
| Q |
218 |
gaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| | ||| ||||||||||||||| | |||||||||||| |
|
|
| T |
7494250 |
gaacttagtaagagaattgaggcccttaatgttgctaagagagtctttaattttacaaatcgtgcacctgagcaacgagttttgagagaaagagaaactc |
7494349 |
T |
|
| Q |
318 |
actcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacaat |
403 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494350 |
actcctttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaat |
7494435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 7519717 - 7520102
Alignment:
| Q |
18 |
ccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7519717 |
ccaacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcg |
7519816 |
T |
|
| Q |
118 |
acaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaat |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
7519817 |
acaagtgatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagataattaag |
7519916 |
T |
|
| Q |
218 |
gaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
7519917 |
gaacttagtaagagaattgaggcccttaatgttggtaaaagaagttttaactttacaaatcgcactcctgagcaacgagttttgaaacaacgagaaactc |
7520016 |
T |
|
| Q |
318 |
actcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacaat |
403 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7520017 |
actcctttattcgtgcagaagaagttattggaagagaggaggagaagaaagagttgatagagttgttgtttaacactagcaacaat |
7520102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 7714486 - 7714095
Alignment:
| Q |
9 |
agcagagagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaaga |
108 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||| |||||||||||||||| || || |||| ||||| ||||| |
|
|
| T |
7714486 |
agcagggagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaaga |
7714387 |
T |
|
| Q |
109 |
cttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcag |
208 |
Q |
| |
|
| ||||| ||||||||||||||| | ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7714386 |
cctgaggtgacaagtgatgaccaatcacaagaaagctaaaaaggtttgcatcttcttctcatcatccaaccaacttctcttttctttcaaaatggttcag |
7714287 |
T |
|
| Q |
209 |
aaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaa |
308 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7714286 |
aaaattaaggaactaagtaagagaattgaggaccttaatgctaataagagaagttttaattttacaaatcgcactcctgagcaacgagttttgaaacaaa |
7714187 |
T |
|
| Q |
309 |
gagaaactcactcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaac |
400 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714186 |
gagaaactcactcctttattcttgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaac |
7714095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 7527767 - 7528152
Alignment:
| Q |
18 |
ccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcg |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||||||||| || ||| |||| ||||| ||||| ||||||| |
|
|
| T |
7527767 |
ccaacaaccatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcg |
7527866 |
T |
|
| Q |
118 |
acaagtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaat |
217 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7527867 |
acaagtgatgaccaatcacaagaaagctaaaaaggtccgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaag |
7527966 |
T |
|
| Q |
218 |
gaacttagtaagagaattgaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | ||| ||||||||||||||| | |||||||||||| |
|
|
| T |
7527967 |
gaacttagtaagagaattgaggcccttaatgttgataagagagtctttaattttacaaatcgcgcacctgagcaacgagttttgagagaaagagaaactc |
7528066 |
T |
|
| Q |
318 |
actcttttattcgcgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacaat |
403 |
Q |
| |
|
|||| |||||| | | ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7528067 |
actcctttattagtgcagaagatgttattggaagagatgaggaaaagaaagagttgatagagttgttgtttaacactagcaacaat |
7528152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 403 - 539
Target Start/End: Complemental strand, 8378365 - 8378229
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
8378365 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacttcccctaaaggtataggggacattttccgggcgtctcc |
8378266 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8378265 |
tatacgagcgtcgcctatagtctatggggacgttttt |
8378229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 14582429 - 14582294
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| | ||||| |
|
|
| T |
14582429 |
cactacaccatttatcctttttaacaacaatcaaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccgggtgtctcct |
14582330 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14582329 |
atacgagcgtcacctatagtctatggggacgttttt |
14582294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 9816870 - 9817005
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
9816870 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgtttttcgggcgtctcct |
9816969 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |
|
|
| T |
9816970 |
atacgagcgtcgcctatagtctttggggacgatttt |
9817005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 8518909 - 8519044
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || || ||||| |
|
|
| T |
8518909 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccggacgtctcct |
8519008 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8519009 |
atacgagcgtcgcctatagtctatggggacgttttt |
8519044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 404 - 534
Target Start/End: Complemental strand, 18453016 - 18452886
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
18453016 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgtttttcgggcgtctcct |
18452917 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacg |
534 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
18452916 |
atacgagcgtcgcctatagtctttggggacg |
18452886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 429 - 539
Target Start/End: Complemental strand, 21841725 - 21841615
Alignment:
| Q |
429 |
aacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcctatacgagcgtcgcctatagtctatg |
528 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
21841725 |
aacaatcgaaaaatgttgccagaactaagaaaaacgtcccctaaaggtataggggacgttttctcggcgtctcctatacgagcgtcgcctatagtctatg |
21841626 |
T |
|
| Q |
529 |
gggacgttttt |
539 |
Q |
| |
|
||||||||||| |
|
|
| T |
21841625 |
gggacgttttt |
21841615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 433
Target Start/End: Complemental strand, 21842055 - 21842025
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaa |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21842055 |
tcactacaccatttatcctttttaacaacaa |
21842025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 25398711 - 25398846
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25398711 |
cactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcct |
25398810 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25398811 |
atacgagcgtcgcctatagtctatggggacattttt |
25398846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 25403849 - 25403984
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25403849 |
cactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcct |
25403948 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25403949 |
atacgagcgtcgcctatagtctatggggacattttt |
25403984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 25407838 - 25407973
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25407838 |
cactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcct |
25407937 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25407938 |
atacgagcgtcgcctatagtctatggggacattttt |
25407973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 403 - 539
Target Start/End: Original strand, 34199270 - 34199406
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||| |||| |
|
|
| T |
34199270 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgtttttcgagcgtctcc |
34199369 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34199370 |
tatacgagcgtcgcctatagtctatggggacgttttt |
34199406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 19096631 - 19096766
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
19096631 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgtcagaactatgaaaaacgtcccctaaaggtataggggacgttttccgggcatctcct |
19096730 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19096731 |
atacgagcgtcgcctatagtctatggggatgttttt |
19096766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 24953913 - 24953778
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||| ||||| |
|
|
| T |
24953913 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtatatgggacgtttttcaggcgtctcct |
24953814 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24953813 |
atacgagcgttgcctatagtctatggggacgttttt |
24953778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 20347983 - 20347847
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaa-tgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||| ||||| ||||| |||||||||| ||||||||| ||||| |||| ||||||| |||| |||| |
|
|
| T |
20347983 |
cactacacaatttatcctttttaacaaaaataaaaaaaatgttgtcagaattatgaaaaacgtcccctaaaggtataagggatgttttctaggcgtctcc |
20347884 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20347883 |
tatacgagcgtcgcttatagtctatggggacgttttt |
20347847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 539
Target Start/End: Original strand, 35523594 - 35523665
Alignment:
| Q |
468 |
cctaaaagtataggggacgttttctgggcgactcctatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||| | |||||||||||| |||| ||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
35523594 |
cctaaaagaacaggggacgtttttcaggcgtctcctattcgagcgtcgcctattgtctaaggggacgttttt |
35523665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 532
Target Start/End: Original strand, 15248176 - 15248305
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
||||| |||||||||||||| || ||||||| |||| ||||||| |||| |||||||| | |||||||| |||||||| |||| ||| ||| |
|
|
| T |
15248176 |
tcactgcaccatttatccttatttgcaacaattaaaaatcgttgccaaaactgtgaaaaacgttgcctaaaagaataggggatatttttcaagcgtctca |
15248275 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatgggga |
532 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |
|
|
| T |
15248276 |
tatacaagcgtcgcctaatgtctatgggga |
15248305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 18495682 - 18495817
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || || ||||| |
|
|
| T |
18495682 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgtttttcggacgtctcct |
18495781 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18495782 |
atacgagcgtcgcctatagtctatggggacgttttt |
18495817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 49552299 - 49552164
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
49552299 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccacaactaagaaaaacgtcccctaaagatataggggacgttttccgggcgtctcct |
49552200 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |
|
|
| T |
49552199 |
atacaagcgtcgcctatagtctatggggacgatttt |
49552164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 403 - 531
Target Start/End: Original strand, 20143161 - 20143289
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
20143161 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgtagccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcc |
20143260 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatgggg |
531 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
20143261 |
tatacgagcgtcgcctatagtctgtgggg |
20143289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 403 - 539
Target Start/End: Original strand, 3538737 - 3538873
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
3538737 |
tcactacaccatttatcctttataaaaataatcgaaaaatgttgccagaactatgaaaatcgttgcctaaaggtataggggacgttttccgggcgtctcc |
3538836 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3538837 |
tatactagcgtcgcctatagtctatggggacgttttt |
3538873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 401 - 539
Target Start/End: Original strand, 1462901 - 1463038
Alignment:
| Q |
401 |
aatcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgact |
500 |
Q |
| |
|
||||||||| |||||||| || | |||||||| |||||| |||||| |||||| | |||| | || || ||||||||||||||||| || | || |
|
|
| T |
1462901 |
aatcactaccccatttattctctctaacaacacctgaaaaacgttgcccgaactacgtaaaatgttgccaaagagtataggggacgtttttcaggtgtct |
1463000 |
T |
|
| Q |
501 |
cctatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1463001 |
cctatacgagcgtcgcctatagtcta-agggacgttttt |
1463038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 11497514 - 11497449
Alignment:
| Q |
474 |
agtataggggacgttttctgggcgactcctatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||| | || | ||||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
11497514 |
agtataggggacgttttttaggtgtctcctatacaagcgttgcctatagtctaaggggacgttttt |
11497449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 53580 - 53715
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
53580 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaattaaggaaaacgtcccctaaaggtataggggacgttttccgggcgtctcct |
53679 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53680 |
atacgagcgtcgcctatagtctatggggacgttttt |
53715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 234946 - 235081
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| | ||||| |
|
|
| T |
234946 |
cactacaccatttatcctttttaacaacaatcaaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccgggtgtctcct |
235045 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
235046 |
atacgagcgtcacctatagtctatggggacgttttt |
235081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 19481651 - 19481786
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
19481651 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataagggacgttttccgggcgtctcct |
19481750 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
19481751 |
atacgagcgtcgcctatagtctatggggacgttttt |
19481786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 403 - 539
Target Start/End: Original strand, 25474430 - 25474566
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||| | | |||| |
|
|
| T |
25474430 |
tcactacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgttttccgaacatctcc |
25474529 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25474530 |
tatacgagcgtcgcctatagtctatggggacgttttt |
25474566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 25605781 - 25605648
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
25605781 |
cactacaccattt-tcctttt-aacaacaatcgaaaaatgttaccagaacaatgaaaaatgtcccctaaaagtataggggacattttttgggcgtctcct |
25605684 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605683 |
atacgagcgtcgcctatagtctatggggacgttttt |
25605648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 403 - 539
Target Start/End: Complemental strand, 21233312 - 21233176
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||| ||| | |||| |
|
|
| T |
21233312 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgccccctaaagatatatgggaggttttccgggtgtctcc |
21233213 |
T |
|
| Q |
503 |
tatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21233212 |
tatacgagcgtcgcctatagtctttggggacgttttt |
21233176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 402 - 503
Target Start/End: Complemental strand, 22837216 - 22837115
Alignment:
| Q |
402 |
atcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
22837216 |
atcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaagaaaaacgtcccctaacggtataggggacgttttccgggcgactc |
22837117 |
T |
|
| Q |
502 |
ct |
503 |
Q |
| |
|
|| |
|
|
| T |
22837116 |
ct |
22837115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 519
Target Start/End: Original strand, 20465763 - 20465879
Alignment:
| Q |
403 |
tcactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcc |
502 |
Q |
| |
|
|||||||||||||||| || | |||||||| |||||| |||||||||| || | |||| | || || ||||||||||||||||| || | |||| |
|
|
| T |
20465763 |
tcactacaccatttattctctctaacaacacctgaaaaacgttgccagaattaagtaaaatgttgccaaagagtataggggacgtttttcaggtgtctcc |
20465862 |
T |
|
| Q |
503 |
tatacgagcgtcgccta |
519 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
20465863 |
tatacgaacgtcgccta |
20465879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 526
Target Start/End: Complemental strand, 22830707 - 22830679
Alignment:
| Q |
498 |
actcctatacgagcgtcgcctatagtcta |
526 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22830707 |
actcctatacgagcgtcgcctatagtcta |
22830679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 404 - 536
Target Start/End: Complemental strand, 16223 - 16091
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | | | |||| ||||||||||||||||||||||| ||| | |
|
|
| T |
16223 |
cactacaccatttatcctttataacaacaattgaaaaatgttgccagaactatgaaaagcgttgcttaaaggtataggggacgttttctgggcgtctctt |
16124 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgtt |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16123 |
atacgagcgtcgcctatagtctatggggacgtt |
16091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 36 - 393
Target Start/End: Complemental strand, 16750769 - 16750412
Alignment:
| Q |
36 |
aactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccagtaa |
135 |
Q |
| |
|
|||| ||| |||| |||||||| ||| ||||||||||||| ||||||||||||||||| || || ||||||||| ||| ||||| |||| | | |
|
|
| T |
16750769 |
aactatgggtggagaagctcaaagatactcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaaga |
16750670 |
T |
|
| Q |
136 |
caagaaggctaaaaagtttcacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaatt |
235 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| || || |||||||| ||||||||||| | || |||| |||||||||||| ||||||| ||| ||||| |
|
|
| T |
16750669 |
caagaaggctaaaaaggttcgcatcttcttatcctcttccaaccagcttctcttttcgtttaacatggctcagaaaattaagaaacttaggaagcgaatt |
16750570 |
T |
|
| Q |
236 |
gaggcccttaatgttggtaagagaatttttaattttacaaatcgcactcctaagcaacgagttttgaaacaaagagaaactcactcttttattcgcgagg |
335 |
Q |
| |
|
|||| ||||| |||| || || |||||| |||||||| |||| ||||||| || |||||||| ||| || |||| |||||| || || ||||| |||| |
|
|
| T |
16750569 |
gagggtcttaacgttgataggaaaattttcaattttactaatcacactcctgagaaacgagttatgaggcagagagtaactcattccttcattcgtgagg |
16750470 |
T |
|
| Q |
336 |
aagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacac |
393 |
Q |
| |
|
|| |||| || |||||||| || || ||||| || |||||| |||| ||||| ||||| |
|
|
| T |
16750469 |
aaaaagtcataggaagagacgacgaaaagaaggatttgataaagttattgttgaacac |
16750412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 4422564 - 4422430
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||| | || ||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
4422564 |
cactacaccatttatccttat-aacaacatttgaaaaatgttgccagaactatgaaaagcgtcgcctaaaagtataggggatgtttttaaggcgtctcct |
4422466 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
4422465 |
atgcgaacgtcgcctatagtctatggagacgttttt |
4422430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 545
Target Start/End: Complemental strand, 11694636 - 11694495
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||| |||||||||||| || ||||| | |||||| |||||| |||||||||||| | |||||||| || ||||| ||| ||| |||| ||||| |
|
|
| T |
11694636 |
cactacagcatttatcctttatagcaacagttgaaaaacgttgcccgaactatgaaaatcgtcccctaagagaataggaaacgcttttcaggcgtctcct |
11694537 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgtttttgatgat |
545 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
11694536 |
atgcgagcgtcgcctattatctatggggacgttttttatgat |
11694495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 491
Target Start/End: Complemental strand, 18406482 - 18406395
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttc |
491 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||| | | |||||| ||||||||||||||||| |
|
|
| T |
18406482 |
cactacaccatttatcctttataacaataattgaaaaatattgccagaactatgaaaatcgttgcctaaaggtataggggacgttttc |
18406395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 3803147 - 3803103
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgcc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3803147 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgcc |
3803103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 411 - 539
Target Start/End: Complemental strand, 87804 - 87676
Alignment:
| Q |
411 |
ccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcctatacgag |
510 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
87804 |
ccatttatcctttataacaacaattgaaaaatgttgccagaactatgaaaagcgttggctaaaggtataggggacgttttctgggtgcctcctatacgag |
87705 |
T |
|
| Q |
511 |
cgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
87704 |
cgtcgcctatagtctatggggacgttttt |
87676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 8186 - 8051
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| ||||||||||||||||||| | | || || | |||||||||||||| |||| || || |
|
|
| T |
8186 |
cactacaccatttattgcctctaacaacaactgaaaaacgttgccagaactatgaaaatcgttgccaaagacaataggggacgtttttcaggcgtcttct |
8087 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8086 |
atacgagcgtcgcctatagtctaaggggacgctttt |
8051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0624
Description:
Target: scaffold0624; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 2190 - 2055
Alignment:
| Q |
404 |
cactacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcct |
503 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||| ||||||||||||||||||| | || || || |||||||||| ||| |||| || || |
|
|
| T |
2190 |
cactacaccatttattgcctctaacaacagtcgaaaatcgttgccagaactatgaaaattgttgccaaagagaataggggacgattttgaggcgtcttct |
2091 |
T |
|
| Q |
504 |
atacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2090 |
atacgagcgtcgcctatagtctaagggcacgttttt |
2055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 539
Target Start/End: Original strand, 23709 - 23805
Alignment:
| Q |
443 |
gttgccagaactatgaaaaacatcccctaaaagtataggggacgttttctgggcgactcctatacgagcgtcgcctatagtctatggggacgttttt |
539 |
Q |
| |
|
||||||||||||||||||| | | || || | |||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||| |
|
|
| T |
23709 |
gttgccagaactatgaaaatcgttgccaaagacaataggggacgtttttcaggcgacttctatacgagcattgcctatagtctaaggggacgctttt |
23805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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