View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0604_low_6 (Length: 543)
Name: NF0604_low_6
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 47198710 - 47198946
Alignment:
| Q |
96 |
ctctgcttgggtttttgtcatgggtgttttcatggtgtttttgattccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaa |
195 |
Q |
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| T |
47198710 |
ctctgcttgggtttttgtcatgggagttttcacggtgtttttgattccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaa |
47198809 |
T |
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| Q |
196 |
cattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtgagtt---agaagtattactttgcaatc-tttaaattagaaaagga |
291 |
Q |
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| T |
47198810 |
cattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtgagttagaagaagtattac-ttgcaatcttttaaattagaaaagga |
47198908 |
T |
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| Q |
292 |
tctttagtggattataatagatccttgccatttagctt |
329 |
Q |
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| T |
47198909 |
tctttagtagattataatagatccttgccatttagctt |
47198946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 359 - 540
Target Start/End: Original strand, 47198939 - 47199120
Alignment:
| Q |
359 |
tttagtttaagcatttatcttttacgctcataattattttcattacattcagtgattgtacttcttcaattattataaatgaaatatttcatttggaatt |
458 |
Q |
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| T |
47198939 |
tttagcttaaccatttatcttttacgctcataattattttcattacattcagttattgtacttcttccattattataaatgaaatatttcatttggaatt |
47199038 |
T |
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| Q |
459 |
cttcatttgagatccacttttgtaacttttaggagaggtattttcattgagctacaaaaacttcttgaatctgtgctcctcc |
540 |
Q |
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| T |
47199039 |
cttcatttgagatccacttttgtaacttttaggagaggtattttcattgagctacaaaaacttcttgaatcagtgttcctcc |
47199120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 47186171 - 47186309
Alignment:
| Q |
96 |
ctctgcttgggtttttgtcatgggtgttttcatggtgtttttgattccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaa |
195 |
Q |
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| T |
47186171 |
ctctgcttgggtttttgtcatgggagttttcacggtattttttattccagagacaaagaatatacccattgaagatatggctgagaaagtatggaaacaa |
47186270 |
T |
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| Q |
196 |
cattggttctggaggaggtttatgcattgaatttaaagt |
234 |
Q |
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| T |
47186271 |
cattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 4317815 - 4317739
Alignment:
| Q |
6 |
ccaccattgtgctactgcttaacactttgattcctgttcacttcacatgatcattattcattgcatcaactaatccc |
82 |
Q |
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| T |
4317815 |
ccaccattgtgctactgcttaacactttgattcctgttcacttcacatgatcattattcattgcatcaactaatccc |
4317739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 748443 - 748369
Alignment:
| Q |
145 |
gagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
219 |
Q |
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| T |
748443 |
gagaccaagaacataccaattgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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