View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0604_low_7 (Length: 493)
Name: NF0604_low_7
Description: NF0604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0604_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 155 - 433
Target Start/End: Complemental strand, 6822215 - 6821937
Alignment:
| Q |
155 |
aaatgtgtccgtacttctgttgaatgagagtttgatagttatgtttgctcggttttgttaacggtcgtatgaaattacttagtggttctcttaatgaata |
254 |
Q |
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| T |
6822215 |
aaatgtgtccctacttctgttgaatgagagtttgatagttatttttgctcggttttgttaacggtcgtatgaaattacttagtggttctcttaatgaata |
6822116 |
T |
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| Q |
255 |
tcggagatatatagtttgaaaattgctttctagttgtgttatcaatctattcaacaagtacaaacacatagatgagaaaagcactattaatatatattat |
354 |
Q |
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| T |
6822115 |
tcggagatatatagtttgaaaattgctttctagttgtgttatcaatctattcaacaagtacaaacacatagatgagaaaagcactattaatatatattat |
6822016 |
T |
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| Q |
355 |
tttgtcaattttaactaacggttaatcaatgacaattaagtgagctcgtaataatgattatcaatgttgatagagttat |
433 |
Q |
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| T |
6822015 |
tttgtcaattttaactaacggttaatcattgacaattaagtgagcacgtaataacgattatcaatgttgatagagttat |
6821937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 6822329 - 6822199
Alignment:
| Q |
2 |
cactttttatcggaacctccaggaacagtcagatatgtatttgatacacttctattcgatgatgcaaagaagctattatatactacatatttggttagta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6822329 |
cactttttatcggaacctccaggaacagtcagatatatatttgatacacttctattcgatgatgcaaagaagctattatatactacatatttggttaata |
6822230 |
T |
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| Q |
102 |
ctttaaagttgcaaaaatgtgtccgtacttc |
132 |
Q |
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| T |
6822229 |
ctttaaagttgcaaaaatgtgtccctacttc |
6822199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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