View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0605_high_1 (Length: 726)

Name: NF0605_high_1
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0605_high_1
NF0605_high_1
[»] chr7 (22 HSPs)
chr7 (29-715)||(7878214-7878900)
chr7 (74-714)||(8589684-8590324)
chr7 (29-500)||(8608918-8609389)
chr7 (138-401)||(8383674-8383937)
chr7 (74-509)||(8544679-8545114)
chr7 (74-388)||(8580743-8581057)
chr7 (150-329)||(8601093-8601272)
chr7 (90-387)||(8575361-8575658)
chr7 (604-700)||(8643971-8644067)
chr7 (160-399)||(29578472-29578711)
chr7 (230-387)||(8569513-8569670)
chr7 (614-714)||(29578154-29578254)
chr7 (614-714)||(8581286-8581386)
chr7 (230-502)||(29582538-29582810)
chr7 (617-711)||(8646466-8646560)
chr7 (614-714)||(10494856-10494956)
chr7 (563-714)||(13333850-13334001)
chr7 (619-714)||(27831357-27831452)
chr7 (614-714)||(8569897-8569997)
chr7 (682-714)||(8667073-8667105)
chr7 (614-714)||(29582323-29582423)
chr7 (677-714)||(8545282-8545319)
[»] chr8 (1 HSPs)
chr8 (197-388)||(12527673-12527864)
[»] chr2 (3 HSPs)
chr2 (614-714)||(11998994-11999094)
chr2 (620-714)||(12245888-12245982)
chr2 (614-714)||(16662474-16662574)
[»] chr5 (1 HSPs)
chr5 (614-714)||(28219504-28219604)
[»] chr1 (2 HSPs)
chr1 (614-714)||(15594620-15594720)
chr1 (615-708)||(52549434-52549527)
[»] chr4 (1 HSPs)
chr4 (564-714)||(35131992-35132142)


Alignment Details
Target: chr7 (Bit Score: 643; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 29 - 715
Target Start/End: Complemental strand, 7878900 - 7878214
Alignment:
Q  29 agctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttct 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7878900 agctccctcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttccaatttct 7878801  T
Q  129 caacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878800 caacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccat 7878701  T
Q  229 aaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttct 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878700 aaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttct 7878601  T
Q  329 ttcttgttaccacttgtttcttcctttgcgaagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggc 428  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |    
T  7878600 ttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatatcaaaacatacctggattatatgtccacgaggtgcacgac 7878501  T
Q  429 gaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaattttgactgtggattggtcatctacaag 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||| ||||    
T  7878500 gaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcgtaaacatcaattttgacatcggattggtcatcttcaag 7878401  T
Q  529 tgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatgga 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878400 tgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatgga 7878301  T
Q  629 gtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagct 715  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878300 gtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagct 7878214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 74 - 714
Target Start/End: Original strand, 8589684 - 8590324
Alignment:
Q  74 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 173  Q
    ||||| ||||| || ||||  |||||||| |||||||||||||||  |||||| ||||||| ||| ||||| ||||  || || ||||||||||||||||    
T  8589684 ttgtcgtcaattaattttttcccctttatcattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactt 8589783  T
Q  174 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 273  Q
    |||||||    ||||  ||||| || |||||||||| ||||||||| |||| || |  |||||||||||||| |||||||| ||||||||| |  ||| |    
T  8589784 tcctcatgtcgtaaagataatcatctaaagcattcattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctcagcttcctggatcat 8589883  T
Q  274 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgaagacatttaatata 373  Q
    ||||||||||||||| ||||  ||||||||||||||||| || |||||||| | ||| || ||||||||  |||||||||  ||  | || |||||||||    
T  8589884 tctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttattaccactgctttcttcctcagcagacacgtttaatata 8589983  T
Q  374 ccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaa 473  Q
    |||||||||||||||  ||| |||||||||||   | | |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    |||    
T  8589984 ccatcagcatctatagaaaagcatacctggataggaagcccacgaggtgcacggcgaactttgagattaaacaaaccaagcaagttgttctcaatcgcaa 8590083  T
Q  474 ccattctctcaccctcataaacatcaattttgactgtggattggtcatctacaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttctt 573  Q
    |||||||||||||||||||||||||||| |||||  ||||||| |||||   |  ||||  | ||  | | ||  || |||| |||| ||||||||||||    
T  8590084 ccattctctcaccctcataaacatcaatgttgacactggattgatcatcataacatgtgacgtattcttgctttttccttataggaatagaagtgttctt 8590183  T
Q  574 aggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatca 673  Q
    |||||||||||||||||||||||| |||  || |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  8590184 aggaatcactacatccatgatatcatcatatattgacgtaccaagagacaatggagtaacatcttgtagcaccaaattaggaacattcttaatcccatca 8590283  T
Q  674 caaagcagagcagcctgaacagctgcaccataagcaacagc 714  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  8590284 caaagcaaagcagcttgaacagctgcaccataagcaacagc 8590324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 29 - 500
Target Start/End: Original strand, 8608918 - 8609389
Alignment:
Q  29 agctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttct 128  Q
    |||||| |||||||||  ||||||||||  || |||| || ||  ||||||||||| ||||| | ||| ||||| ||||||| |||||  | || ||| |    
T  8608918 agctccttcagaaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgt 8609017  T
Q  129 caacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccat 228  Q
    ||  ||  || ||| | |||||||| ||  |||||||||||||||||| |||  | |||| |||||| |||||| |||||| |||| |||| ||||   |    
T  8609018 cagtagaggtaagcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttcttttt 8609117  T
Q  229 aaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttct 328  Q
    |||||||| ||||||    ||||| | ||||||||||| |||| ||||||||||||||||  |||| ||||  |||||||| || || || ||||| |||    
T  8609118 aaacttcaagtcttcctctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatct 8609217  T
Q  329 ttcttgttaccacttgtttcttcctttgcgaagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggc 428  Q
    ||||| |||||||| |||||||||| |||  |||||||||||||||||||||||||||||  ||| ||||| |||||   | |||||||||| ||| |      
T  8609218 ttcttattaccactggtttcttcctctgcagagacatttaatataccatcagcatctatagcaaagcatacttggataggaagtccacgaggcgcaagag 8609317  T
Q  429 gaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaa 500  Q
    | |||| ||| ||||| ||||||||||||||||||||||   ||||   |||||||||||| ||||||||||    
T  8609318 gtactttgagttcaaataaaccaagcaaattgttctcactagcaacagatctctcaccctcgtaaacatcaa 8609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 138 - 401
Target Start/End: Complemental strand, 8383937 - 8383674
Alignment:
Q  138 tgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcat 237  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  | ||||  ||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  8383937 tgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcat 8383838  T
Q  238 gtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtta 337  Q
    |||||||| |||||| | ||| || ||||  ||| ||||||||||||| ||  ||||||  ||||||||||||||| | |||||||| |||| ||| ||     
T  8383837 gtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattc 8383738  T
Q  338 ccacttgtttcttcctttgcgaagacatttaatataccatcagcatctatattaaaacatacct 401  Q
    ||||  || ||||| || ||  |||||||||||||||||||| |||||| |  |||||||||||    
T  8383737 ccacaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatacct 8383674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 74 - 509
Target Start/End: Original strand, 8544679 - 8545114
Alignment:
Q  74 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 173  Q
    |||| |||||| ||| ||| ||||||||| |||||||||||||| | || ||| || ||||| | |||||| ||| |||| | |||||||||||||||||    
T  8544679 ttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactt 8544778  T
Q  174 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 273  Q
    ||||||   | ||||  |||| ||||||||||||   ||||  ||| || |   | ||||||||||||| || |||||| |  |||||||| |  ||| |    
T  8544779 tcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcat 8544878  T
Q  274 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgaagacatttaatata 373  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||  ||||||| ||||||||  ||||  |||| ||||||| |    
T  8544879 tctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattcttactaccactggtttcttctgttgcagagacgtttaataaa 8544978  T
Q  374 ccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaa 473  Q
    |||| ||||||||||  ||| |||||    |    | | | ||| || ||| |  |||||| ||||| ||| ||||||||||| ||||||||||   |||    
T  8544979 ccattagcatctatagcaaagcatactgtaaaaggaaggcgacggggagcaagaggaactttgagataaaataaaccaagcaagttgttctcactcgcaa 8545078  T
Q  474 ccattctctcaccctcataaacatcaattttgactg 509  Q
      |||||||||||||||||||||| ||||| |||||    
T  8545079 taattctctcaccctcataaacattaatttggactg 8545114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 74 - 388
Target Start/End: Original strand, 8580743 - 8581057
Alignment:
Q  74 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 173  Q
    |||| |||||| ||| ||| ||||||||| ||||||||||| || |   |||| || ||||  |||||||||||| |||| | || ||||| ||||||||    
T  8580743 ttgttatcaatcaaactttttccctttatcattgcagaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactt 8580842  T
Q  174 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 273  Q
    |||||| | | ||||  ||||| ||||||||||| | |||| |||| |||| | | |||| |||||||| || ||| ||    ||||||| |  |||| |    
T  8580843 tcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtcttgagccttaaaaatttcagcttgtaaaatcat 8580942  T
Q  274 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgaagacatttaatata 373  Q
    | |||||||||| || ||||| |||||||||||||||||||| ||||||||  | |||||  || || |||||||||||| |||  ||||||||||||||    
T  8580943 tttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttactagcatttgtttcttcctctgcagagacatttaatata 8581042  T
Q  374 ccatcagcatctata 388  Q
    ||||||| |||||||    
T  8581043 ccatcagaatctata 8581057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 150 - 329
Target Start/End: Original strand, 8601093 - 8601272
Alignment:
Q  150 taacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagactt 249  Q
    |||| |||||||||||||||||||| |||||  | ||||  ||||| |||| | |||||| |||| |||| |||| | | |||||||||||||||   ||    
T  8601093 taacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatcttt 8601192  T
Q  250 gaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 329  Q
    ||| | |||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||    
T  8601193 gaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttctt 8601272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 90 - 387
Target Start/End: Original strand, 8575361 - 8575658
Alignment:
Q  90 tttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaat 189  Q
    ||||||||||||| ||||| ||||| || | | |||| || ||||| ||||||||||||  ||| | |||||||||||||| |||||||    | | ||     
T  8575361 tttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaag 8575460  T
Q  190 gtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcc 289  Q
     ||||| ||||| ||||| | |||| |||| |||| | | |||| |||||||| || ||||||    |||||||||| |||| ||||| |||||||||      
T  8575461 ataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttcagcttcttgaatcattctcgcaatttcttga 8575560  T
Q  290 cttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgaagacatttaatataccatcagcatctat 387  Q
     | |||||||| |  | || |||||| |||| |||  ||||||| | |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  8575561 gtcgatagtctacagtattgattcgtcattgcaatacctttcttataaccacttgtttcttcctttgccgagacatttaatataccatcaacatctat 8575658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 604 - 700
Target Start/End: Original strand, 8643971 - 8644067
Alignment:
Q  604 tactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgca 700  Q
    ||||| ||| ||||||||||||| ||||||||||| || |||||||||||| |||||||||||||| || ||||||| || ||||||||||||||||    
T  8643971 tactgtcgtaccaagagacaatgaagtaacatcttccagcaccaaattaggtacattcttaataccttcgcaaagcaaagaagcctgaacagctgca 8644067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 399
Target Start/End: Complemental strand, 29578711 - 29578472
Alignment:
Q  160 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 259  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  29578711 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 29578612  T
Q  260 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcga 359  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||  ||      
T  29578611 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 29578512  T
Q  360 agacatttaatataccatcagcatctatattaaaacatac 399  Q
     |||||||||||||||||| ||||| |||  |||||||||    
T  29578511 tgacatttaatataccatctgcatcgatagcaaaacatac 29578472  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 8569513 - 8569670
Alignment:
Q  230 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 329  Q
    ||||||||||||| || |||||| | ||||||||| |  ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||||||||| |    
T  8569513 aacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattgtaatttcat 8569612  T
Q  330 tcttgttaccacttgtttcttcctttgcgaagacatttaatataccatcagcatctat 387  Q
    | || || ||||| |||||||||  |||  |||| || || || ||||||||||||||    
T  8569613 ttttattgccactggtttcttccactgcagagacgttcaaaattccatcagcatctat 8569670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 614 - 714
Target Start/End: Complemental strand, 29578254 - 29578154
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||   | || ||||||||| ||||||||||||||||||||||    
T  29578254 ccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag 29578155  T
Q  714 c 714  Q
    |    
T  29578154 c 29578154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 614 - 714
Target Start/End: Original strand, 8581286 - 8581386
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||| |||||||| ||||||||| |||| | ||| || |||||| ||||||| || |||| || || ||||||||||| ||| ||||||||||||||||    
T  8581286 ccaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacag 8581385  T
Q  714 c 714  Q
    |    
T  8581386 c 8581386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 230 - 502
Target Start/End: Complemental strand, 29582810 - 29582538
Alignment:
Q  230 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 329  Q
    |||||||  ||||||  |||||| | ||| |||||||  ||| ||||||||||||||||  |||| | |||||||||| |||| || |||||||| ||||    
T  29582810 aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt 29582711  T
Q  330 tcttgttaccacttgtttcttcctttgcgaagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcg 429  Q
    | || || ||| | ||||||||||  ||   |||||||| ||||||||| |||||||||  ||| ||||| | ||| | | | || ||||| |||||  |    
T  29582710 ttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgagg 29582611  T
Q  430 aacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaatt 502  Q
    || |  ||||  ||||||||| ||||| ||||||||||   |    |||||||||||||||||||||| ||||    
T  29582610 aattaagagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaatt 29582538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 617 - 711
Target Start/End: Original strand, 8646466 - 8646560
Alignment:
Q  617 agagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaac 711  Q
    ||||||||||| || |||||||| |||||||| || ||| |||||||||  |||||||| |  | |||||||||||| ||||| |||||||||||    
T  8646466 agagacaatggggtgacatcttgaaacaccaagtttggagcattcttaaagccatcacataataaagcagcctgaacggctgcgccataagcaac 8646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 714
Target Start/End: Complemental strand, 10494956 - 10494856
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||| |||||||| ||||||||| | | |||||| || || ||||||||||  || ||||  |  | ||||||||||||||||||||||||||||||||    
T  10494956 ccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacag 10494857  T
Q  714 c 714  Q
    |    
T  10494856 c 10494856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 563 - 714
Target Start/End: Complemental strand, 13334001 - 13333850
Alignment:
Q  563 gaagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattct 662  Q
    ||||||||| |||||||||| |||| ||||||||  |||  ||||||  | ||||| || |||||  |||||||| | | |||||| || || ||| |||    
T  13334001 gaagtgttcctaggaatcacaacattcatgatatgttcatatactgaaataccaagtgataatgggataacatctcgtagcaccaagttcgggacagtct 13333902  T
Q  663 taataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 714  Q
    |||  || ||||  |  | |||||||||||||||||||||||||||||||||    
T  13333901 taaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagc 13333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 714
Target Start/End: Complemental strand, 27831452 - 27831357
Alignment:
Q  619 agacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 714  Q
    ||||| ||||||||||||   ||||||||| || ||||||||| ||||  ||||||  | || ||||||||| |||||||||||| ||||||||||    
T  27831452 agacagtggagtaacatcgatcaacaccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagc 27831357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 714
Target Start/End: Original strand, 8569897 - 8569997
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||| |||||||| ||||||||| |||| ||||| || |||||| ||||||  |  |||| | ||| | ||||||||| ||||||||| ||||||||||    
T  8569897 ccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaacag 8569996  T
Q  714 c 714  Q
    |    
T  8569997 c 8569997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 682 - 714
Target Start/End: Original strand, 8667073 - 8667105
Alignment:
Q  682 agcagcctgaacagctgcaccataagcaacagc 714  Q
    |||||||||||||||||||||||||||||||||    
T  8667073 agcagcctgaacagctgcaccataagcaacagc 8667105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 714
Target Start/End: Complemental strand, 29582423 - 29582323
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||| ||||| || |||| ||||||||| |  ||||  |||||||||| ||| || |||   |||| ||||||||| ||||||||||||||||||||||    
T  29582423 ccaagtgacaagggtgtaatatcttgcaagataaaatctggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacag 29582324  T
Q  714 c 714  Q
    |    
T  29582323 c 29582323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 714
Target Start/End: Original strand, 8545282 - 8545319
Alignment:
Q  677 agcagagcagcctgaacagctgcaccataagcaacagc 714  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  8545282 agcaaagcagcctggacagctgcaccataagcaacagc 8545319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 197 - 388
Target Start/End: Original strand, 12527673 - 12527864
Alignment:
Q  197 tccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgata 296  Q
    ||||||||||| | |||| |||| ||||   | |||||||| ||||||| |||||| | ||||||||| |  ||| ||||| |||||||||| |||||||    
T  12527673 tccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgata 12527772  T
Q  297 gtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgaagacatttaatataccatcagcatctata 388  Q
     ||||||||||||||| || |||||||| |||||||| |||||||| |||| |||||| ||  |||| ||||||||||| ||||||||||||    
T  12527773 atcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctata 12527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 614 - 714
Target Start/End: Original strand, 11998994 - 11999094
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| | | ||||  | || |||||| ||||||||||| |||||||| ||||    
T  11998994 ccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacag 11999093  T
Q  714 c 714  Q
    |    
T  11999094 c 11999094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 620 - 714
Target Start/End: Complemental strand, 12245982 - 12245888
Alignment:
Q  620 gacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 714  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||| | | | ||  | || |||||| ||||||||||| ||||||||||||||    
T  12245982 gacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagc 12245888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 714
Target Start/End: Complemental strand, 16662574 - 16662474
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||| |||||||| ||||| ||| ||| |||||| || ||||||| |||||| || ||||  | || |||||| || |||||||| |||||||||||||    
T  16662574 ccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacag 16662475  T
Q  714 c 714  Q
    |    
T  16662474 c 16662474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 614 - 714
Target Start/End: Original strand, 28219504 - 28219604
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||||||||| || ||||||||||||| |||||| || ||||| || ||||  || ||||  | || ||||||||| ||||||||||||||||||||||    
T  28219504 ccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaacag 28219603  T
Q  714 c 714  Q
    |    
T  28219604 c 28219604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 614 - 714
Target Start/End: Original strand, 15594620 - 15594720
Alignment:
Q  614 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 713  Q
    ||||||||||| || | ||||||||| | |||||| || |||||||| |||| ||| ||||  | || ||||||||| ||||||||||||||||||||||    
T  15594620 ccaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacag 15594719  T
Q  714 c 714  Q
    |    
T  15594720 c 15594720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 708
Target Start/End: Complemental strand, 52549527 - 52549434
Alignment:
Q  615 caagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagc 708  Q
    |||||||||| || |||||||| |||| |||||| || |||||||||| ||| || ||||  | ||  ||||||||||||||||| ||||||||    
T  52549527 caagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagc 52549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 714
Target Start/End: Original strand, 35131992 - 35132142
Alignment:
Q  564 aagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattctt 663  Q
    |||||||| |||||||||| |||| |||||||||  | | || |||| | ||||||||||| || |||||||| || |||||||| || |||||||| ||    
T  35131992 aagtgttcctaggaatcaccacattcatgatatctcctactattgacctaccaagagacaaaggtgtaacatcctgtaacaccaactttggaacattttt 35132091  T
Q  664 aataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 714  Q
     || || | ||  | || |||||||||||| ||||| |||||||| |||||    
T  35132092 tatgcctttactcaacaaagcagcctgaactgctgccccataagctacagc 35132142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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