View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0605_low_11 (Length: 318)

Name: NF0605_low_11
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0605_low_11
NF0605_low_11
[»] chr5 (2 HSPs)
chr5 (99-209)||(41975393-41975503)
chr5 (214-294)||(41974724-41974804)
[»] chr3 (2 HSPs)
chr3 (99-186)||(1222672-1222759)
chr3 (214-294)||(1223040-1223120)
[»] scaffold0200 (1 HSPs)
scaffold0200 (214-294)||(2032-2112)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 41975503 - 41975393
Alignment:
Q  99 aatgatagatatgtataagggacatattactggagtaatagagtttgttaatgacaattaatatgagacactaggatcttgtatttcagagttaaaagct 198  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  41975503 aatgatagatatgtataagggacatattactggagtagtagagtttgttaatgacaattaatatgagacacttggatcttgtatttgagagttaaaagct 41975404  T
Q  199 aatcgtggaat 209  Q
    |||||||||||    
T  41975403 aatcgtggaat 41975393  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 41974804 - 41974724
Alignment:
Q  214 ttttcttcgttctgcttttctgttttcgattggcaactttgttccttgcttctatgtatgttttgtctgtcttaatataac 294  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  41974804 ttttcttcgttctgcttttctgatttggattggcagctttgttcctggcttctatggatgttttgtctgtcttaatataac 41974724  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 1222672 - 1222759
Alignment:
Q  99 aatgatagatatgtataagggacatattactggagtaatagagtttgttaatgacaattaatatgagacactaggatcttgtatttca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222672 aatgatagatatgtataagggacatattactggagtaatagagtttgttaatgacaattaatatgagacactaggatcttgtatttca 1222759  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 1223040 - 1223120
Alignment:
Q  214 ttttcttcgttctgcttttctgttttcgattggcaactttgttccttgcttctatgtatgttttgtctgtcttaatataac 294  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||  |||||||| ||||||||||||||||||||||||    
T  1223040 ttttcttcgttctgcttttctgttttggattggcagctttgttcctgacttctatggatgttttgtctgtcttaatataac 1223120  T

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Target: scaffold0200 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 2112 - 2032
Alignment:
Q  214 ttttcttcgttctgcttttctgttttcgattggcaactttgttccttgcttctatgtatgttttgtctgtcttaatataac 294  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  2112 ttttcttcgttctgcttttctgatttggattggcagctttgttcctggcttctatggatgttttgtctgtcttaatataac 2032  T

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