View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0605_low_12 (Length: 312)
Name: NF0605_low_12
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0605_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 86 - 291
Target Start/End: Original strand, 44866444 - 44866649
Alignment:
| Q |
86 |
tgtggatgccgatgccgccacagtttgatgccttgacaattagtggtgagtttatgtgaacatcgaccgacagtcttagttttagtattttgatgagctg |
185 |
Q |
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| T |
44866444 |
tgtggatgccgatgccgccacagtttgatgccttgacaattagtggtgagtttatgtgaacatcgaccgacagtcttagttttagtattttgatgagctg |
44866543 |
T |
|
| Q |
186 |
ttgatttggcgagcaagctaatacataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatg |
285 |
Q |
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| T |
44866544 |
ttgatttggcgagcaagctaatacataaaattgagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatg |
44866643 |
T |
|
| Q |
286 |
atgatg |
291 |
Q |
| |
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|||||| |
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| T |
44866644 |
atgatg |
44866649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 45246993 - 45246821
Alignment:
| Q |
111 |
tgatgccttgacaattagtggtgagtttatgtgaacat-cgaccgacagtcttagttttagtattttgatgagctgttgatttggcgagcaagctaatac |
209 |
Q |
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||||||||||||| ||||||||||||||||||||| || | | |||||||||||||||||||| ||||||||| | || |||| || |||| ||||||| |
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| T |
45246993 |
tgatgccttgacagttagtggtgagtttatgtgaatattcaatcgacagtcttagttttagtactttgatgagtttttaattttgctagcatcctaatac |
45246894 |
T |
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| Q |
210 |
ataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaatt |
282 |
Q |
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||| ||||||||| || ||| |||| ||| |||||||||||||||| || |||||||| ||||||||||||| |
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| T |
45246893 |
atagaatggagtaacttacttgttgatgatatatatagaaatcttttgggaatagtatcaattccatttaatt |
45246821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 28752305 - 28752109
Alignment:
| Q |
96 |
gatgccgccacagtttgatgccttgacaattagtggtgagttt-atgtgaacatcgaccgacagtcttagttttagtattttgatgagctgttgatttgg |
194 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||||||| | | | |||| |
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| T |
28752305 |
gatgcccccacagtttgatgccttgacaattagtggtaagttttatgtgaatatcgatcgacactcttagttttagtattttgatgagttactaacttgg |
28752206 |
T |
|
| Q |
195 |
cgagcaagctaatacataaaatggagtagctcactaattgacgatgtatatagaaatctttttgggatagtatccattccatttaattatgatgatg |
291 |
Q |
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| |||| |||||| ||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||||||| | ||||||||||| |||| ||||| |
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| T |
28752205 |
ctagcatgctaatcaatagaattgagtagctcactaattgatgatttatatagaaatcttttggggatagtaccaattccatttaaatatgttgatg |
28752109 |
T |
|
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