View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0605_low_17 (Length: 279)

Name: NF0605_low_17
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0605_low_17
NF0605_low_17
[»] chr8 (5 HSPs)
chr8 (58-238)||(11721400-11721577)
chr8 (58-238)||(9184701-9184869)
chr8 (58-146)||(15306071-15306159)
chr8 (58-146)||(15486440-15486528)
chr8 (58-145)||(38882519-38882606)
[»] chr7 (13 HSPs)
chr7 (58-158)||(23168398-23168498)
chr7 (68-234)||(48704493-48704647)
chr7 (63-145)||(11683109-11683191)
chr7 (58-145)||(2167786-2167873)
chr7 (58-145)||(38613777-38613864)
chr7 (58-145)||(46812307-46812394)
chr7 (69-123)||(17199241-17199295)
chr7 (58-145)||(27955682-27955768)
chr7 (58-145)||(33038530-33038617)
chr7 (69-119)||(6057093-6057143)
chr7 (61-145)||(8423005-8423089)
chr7 (58-146)||(20478316-20478404)
chr7 (61-145)||(35344014-35344098)
[»] chr3 (14 HSPs)
chr3 (68-238)||(26448941-26449099)
chr3 (69-145)||(54093012-54093088)
chr3 (58-145)||(24382615-24382702)
chr3 (69-119)||(41623978-41624028)
chr3 (61-145)||(41020727-41020811)
chr3 (58-145)||(2977054-2977141)
chr3 (62-145)||(23774464-23774547)
chr3 (89-159)||(19987348-19987418)
chr3 (96-145)||(32844099-32844148)
chr3 (69-142)||(48634205-48634278)
chr3 (70-146)||(18430000-18430076)
chr3 (97-145)||(33112910-33112958)
chr3 (58-146)||(33852404-33852492)
chr3 (89-145)||(49495840-49495895)
[»] chr2 (16 HSPs)
chr2 (68-230)||(11315000-11315150)
chr2 (58-234)||(20941040-20941213)
chr2 (68-144)||(10716621-10716697)
chr2 (69-145)||(40097872-40097948)
chr2 (69-145)||(4416688-4416764)
chr2 (58-148)||(6785761-6785851)
chr2 (87-145)||(17946438-17946496)
chr2 (67-173)||(361771-361874)
chr2 (89-145)||(7744388-7744444)
chr2 (58-146)||(24207833-24207921)
chr2 (190-241)||(10716536-10716587)
chr2 (62-145)||(37417595-37417678)
chr2 (63-145)||(39841-39923)
chr2 (69-123)||(14000124-14000178)
chr2 (58-146)||(15432638-15432726)
chr2 (69-145)||(29909392-29909468)
[»] chr4 (10 HSPs)
chr4 (68-145)||(25993824-25993901)
chr4 (68-241)||(13450653-13450814)
chr4 (73-145)||(27382447-27382519)
chr4 (58-145)||(4519681-4519768)
chr4 (69-119)||(50131478-50131528)
chr4 (69-119)||(50131892-50131942)
chr4 (61-145)||(10762897-10762981)
chr4 (111-145)||(41355960-41355994)
chr4 (69-145)||(10372400-10372476)
chr4 (58-145)||(51041657-51041745)
[»] chr5 (7 HSPs)
chr5 (58-236)||(13452206-13452381)
chr5 (60-145)||(35292111-35292196)
chr5 (69-145)||(35395648-35395724)
chr5 (187-239)||(24497166-24497218)
chr5 (58-146)||(42473369-42473457)
chr5 (58-148)||(29621541-29621631)
chr5 (58-146)||(40780824-40780912)
[»] chr6 (8 HSPs)
chr6 (72-145)||(25171832-25171905)
chr6 (61-145)||(30891431-30891516)
chr6 (177-235)||(30891562-30891620)
chr6 (95-174)||(4314574-4314650)
chr6 (61-145)||(29077644-29077728)
chr6 (102-174)||(17933661-17933730)
chr6 (95-144)||(31209218-31209267)
chr6 (69-145)||(29112624-29112700)
[»] chr1 (8 HSPs)
chr1 (58-145)||(18183674-18183761)
chr1 (89-144)||(51122243-51122298)
chr1 (58-146)||(45380706-45380794)
chr1 (58-148)||(42134792-42134882)
chr1 (69-119)||(43868930-43868980)
chr1 (58-146)||(1442794-1442882)
chr1 (58-146)||(44158096-44158184)
chr1 (61-145)||(47269180-47269264)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 11721577 - 11721400
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgat 157  Q
    ||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||   ||| |||||    
T  11721577 ttcactcggacacatcaaatacgtccctgatctttctccttcccgctaaaaccttcaccttcttcacctctccaaaatcatcatcatc---tccggcgat 11721481  T
Q  158 caacgttggcaaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttctttttct 238  Q
    |||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11721480 caacattggaaaagataactttttgaaggaagaattcgtctgtggttaaggtaacaacgttcctcttctttttctttttct 11721400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 9184701 - 9184869
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgat 157  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||||   ||||||||||||||| || ||    
T  9184701 ttcactcagacacatcaaatacgtccatgatctttctccttcccgctaaaaccttcatcatcttcacctctccaaa---atcatcatcatctccggcaat 9184797  T
Q  158 caacgttggcaaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttctttttct 238  Q
    ||||||||         | ||||| ||| |||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  9184798 caacgttg---------aattttttaaggaagaattcgtctatggttaaggtaacatcggtcctcttctttttctttttct 9184869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 15306071 - 15306159
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| ||||||||| |||||| ||||| ||||||| ||  |||||||||||||||||    
T  15306071 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgccaaaaccgtcaccctcttcacttcaccaaaatcatcatcatca 15306159  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 15486440 - 15486528
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| ||||||||| |||||| ||||| ||||||| ||  |||||||||||||||||    
T  15486440 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgccaaaaccgtcaccctcttcacttcaccaaaatcatcatcatca 15486528  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 38882606 - 38882519
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||| ||| ||||| |||| | ||| ||||||| ||||| ||||| |||| |||||| || ||||||||||||||||    
T  38882606 ttcactcagaaacataaaaaacgtcattgacccttctccttcccactaaagccttctccattttcaccgctccaaaatcatcatcatc 38882519  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 23168398 - 23168498
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgat 157  Q
    |||||||||||||||||||||| || |||| ||||| |||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||| |||||    
T  23168398 ttcactcagacacatcaaacacatcattgacctttctccttcccgttaaaacctttaccatcttaacctctccaaaatcatcatcatcatctccggcgat 23168497  T
Q  158 c 158  Q
    |    
T  23168498 c 23168498  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 48704493 - 48704647
Alignment:
Q  68 cacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttggc 167  Q
    ||||||||||||||| |||  |||||  ||||||||||||||||||||||||||| ||||| ||||   ||||||||||||| | ||||||||||||       
T  48704493 cacatcaaacacgtctttggcctttctacttcccgctaaaaccttcaccatcttcgcctctccaaa---atcatcatcatcttcggcgatcaacgtt--- 48704586  T
Q  168 aaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttcttt 234  Q
      |||    ||||||||| ||||||||||||||| ||||||||||  ||||||| || |||||||||    
T  48704587 --aga----tttttgaaggaagaattcgtctgtggttaaggtaacgtcgttccttttttttttcttt 48704647  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 11683109 - 11683191
Alignment:
Q  63 tcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||||||||| | |  ||||  ||| |||| |||||||||||||||||||||||| |||| |||||||| |||||||    
T  11683109 tcagacacatcaaacaagactctgattcttctcctttccgctaaaaccttcaccatcttcatctctccaaaatcaccatcatc 11683191  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 2167786 - 2167873
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||| ||||| |||||||| ||||| |||| | ||| ||||||||||||||| ||| ||||  |||||||| |||||||||| |||||    
T  2167786 ttcaatcagaaacatcaaaaacgtctttgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcttcatc 2167873  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 38613777 - 38613864
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||||||| | ||| |||| | ||| ||||||||||||||| ||| | ||  |||||||| ||||||||||||||||    
T  38613777 ttcactcagaaacatcaaaaatgtcattgacccttctccttcccgctaaaactttctctattctcacctctccaaaatcatcatcatc 38613864  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 46812394 - 46812307
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||| ||||| |||||||| ||| |||||| ||||| ||||||| ||||||| ||| ||||  ||||| || ||||||||||||||||    
T  46812394 ttcagtcagaaacatcaaaaacgaccttgacctttctccttcccactaaaactttctccattctcacccctccaaaatcatcatcatc 46812307  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 17199241 - 17199295
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttca 123  Q
    ||||||||||||||| ||||  ||| |||||||||||||||||||| ||||||||    
T  17199241 acatcaaacacgtccctgattattctccttcccgctaaaaccttcatcatcttca 17199295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 27955682 - 27955768
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||| ||||| |||| ||| |||||||||| | |||  ||||||||| |||||||| ||||  |||||||| ||||||||||||||||    
T  27955682 ttcagtcagaaacattaaaaacgtccttgacccttctgcttcccgcttaaaccttc-ccattctcacctctccaaaatcatcatcatc 27955768  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 33038617 - 33038530
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||||||| ||||| || | | ||| ||||||||||||||| ||| ||||   |||| || ||||||||||||||||    
T  33038617 ttcactcagaaacatcaaaaacgtcattaacccttccccttcccgctaaaactttctccattcccacccctccaaaatcatcatcatc 33038530  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 6057093 - 6057143
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatc 119  Q
    |||||| |||||||| ||| ||||| |||||||||||||||||||| ||||    
T  6057093 acatcatacacgtccctgacctttctccttcccgctaaaaccttcatcatc 6057143  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 8423089 - 8423005
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||| |||||||| || |||||||   ||| ||||||||||||||| ||| ||||  ||| | || ||||||||||||||||    
T  8423089 actcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcatccctccaaaatcatcatcatc 8423005  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 20478316 - 20478404
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||  ||||| ||||||| ||  |||||||||||||||||    
T  20478316 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatca 20478404  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 35344098 - 35344014
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||| |||||||| || ||||| |   ||| ||||||||||||||| ||| ||||  ||||| || ||||||||||||||||    
T  35344098 actcagaaacatcaaaaacatccttaactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatc 35344014  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 26449099 - 26448941
Alignment:
Q  68 cacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttggc 167  Q
    |||||||||||||| | ||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||   ||||||| || ||||| |||||     
T  26449099 cacatcaaacacgttcctgacctttctcctttccgctaaaaccttcaccatcttcacctctccaaaatcatcat---catctccggcaatcaaggttgg- 26449004  T
Q  168 aaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttctttttct 238  Q
             ||||||||| |||||||||| |||| ||||||||||  | ||||||||| ||||||||||||    
T  26449003 --------atttttgaaggaagaattcgtatgtggttaaggtaacgtcattcctcttccttttctttttct 26448941  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 54093012 - 54093088
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||| ||| |||||| ||| ||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  54093012 acataaaaaacgtccatgacctttctccttcccgctaaaaccttcatcattttcacctctccaaaatcatcatcatc 54093088  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 24382702 - 24382615
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatct-ttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||| ||| ||||| ||| ||| ||| ||||||||||||||| ||| |||| |||||| |||||||||||||||||||    
T  24382702 ttcactcagaaacataaaaaacgtcattg-tctcttctccttcccgctaaaacattctccattttcaccccttcaaaatcatcatcatc 24382615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 41623978 - 41624028
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatc 119  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||| ||||    
T  41623978 acatcaaacacgtccatgacctttctccttcccgctaaaaccttcatcatc 41624028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 41020811 - 41020727
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||| |||||||| || |||||||   ||| ||||||||||||||| ||| ||||  ||||| || ||||||||||||||||    
T  41020811 actcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatc 41020727  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 2977141 - 2977054
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||||||| | || | ||| | |||  |||||||| ||||||||| ||||  |||||||| ||||||||||||||||    
T  2977141 ttcactcagaaacatcaaaaatgttcgtgacccttcttcttcccgcaaaaaccttctccattctcacctctccaaaatcatcatcatc 2977054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 23774464 - 23774547
Alignment:
Q  62 ctcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||| |||| ||| ||||||||||   ||| ||||||||||||||| ||| ||||  |||||||| ||||| ||||||||||    
T  23774464 ctcagaaacataaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcatcatc 23774547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 19987418 - 19987348
Alignment:
Q  89 ctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatca 159  Q
    ||||| |||||||||  ||||| ||||| ||||||| ||  ||||||||||||||||||| || |||||||    
T  19987418 ctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatcatcaccggcgatca 19987348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 32844148 - 32844099
Alignment:
Q  96 cttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||| |||||||| |||||||||||||| |||| ||||| ||||||||||    
T  32844148 cttctcgctaaaagcttcaccatcttcatctctccaaaagcatcatcatc 32844099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 48634205 - 48634278
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatc 142  Q
    |||||||| ||||||||||   ||| ||||||||||||||| ||| ||||  |||||||| ||||| |||||||    
T  48634205 acatcaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcatc 48634278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 18430076 - 18430000
Alignment:
Q  70 catcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||| || ||||||| ||||| | || |||||||||| ||| ||||  ||||| || |||||||||||||||||    
T  18430076 catcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcatcatca 18430000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 33112958 - 33112910
Alignment:
Q  97 ttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||||||||| ||| ||||  |||||||| ||||||||||||||||    
T  33112958 ttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 33112910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 33852492 - 33852404
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    |||| ||||| |||| ||| || |||||||  |||| |||| |||||||||| ||| ||||  ||||| || |||||||||||||||||    
T  33852492 ttcagtcagaaacataaaaaacatccttgacttttcacctttccgctaaaactttctccattctcacccctccaaaatcatcatcatca 33852404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 49495895 - 49495840
Alignment:
Q  89 ctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||| ||||||||| |||||||||| || |||| ||||| ||||||||||||||||    
T  49495895 ctttctccttcccgc-aaaaccttcatcaccttctcctctccaaaatcatcatcatc 49495840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 11315150 - 11315000
Alignment:
Q  68 cacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttggc 167  Q
    |||||||||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||   |||||||| |||||||| ||||     
T  11315150 cacatcaaacacgtccctgacctttctccttcctgctaaaaccttcatcatcttcacctctccaaaatcatcat---catctccaacgatcaacattgg- 11315055  T
Q  168 aaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttcttttt 230  Q
             ||||||||| |||||||||| |||| ||||||||||   |||||||||||||||    
T  11315054 --------atttttgaaggaagaattcgtgtgtggttaaggtaacgttgttcctcttcttttt 11315000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 20941040 - 20941213
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgat 157  Q
    ||||||||||||||||||||| |||  |||   ||| |||| |||||||||||||||| | ||||| |||| ||||||||||| |||| ||   | ||||    
T  20941040 ttcactcagacacatcaaacaagtctctgactcttctcctttccgctaaaaccttcacaaacttcatctctccaaaatcatcaccatcttc---atcgat 20941136  T
Q  158 caacgttggcaaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttcttt 234  Q
    ||| ||||| ||||||  | |||||||| |||| ||||||| |  ||||||||||  ||||| ||||||||||||||    
T  20941137 caatgttggaaaagattgcattttgaaggaagatttcgtcttttgttaaggtaacgccgttcgtcttctttttcttt 20941213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 10716697 - 10716621
Alignment:
Q  68 cacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcat 144  Q
    |||||||||||||||||||| ||||| |||||| ||||||| ||||| ||||||||||||| |||||||| ||||||    
T  10716697 cacatcaaacacgtccttgacctttctccttcctgctaaaatcttcatcatcttcacctctccaaaatcaccatcat 10716621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 40097872 - 40097948
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||| ||| ||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  40097872 acatcaaacatgtccctgacctttctccttcccgctagaaccttcatcatcttcacctctccaaaatcatcatcatc 40097948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 4416764 - 4416688
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||| |||||| ||| ||||| |||| |||||||| |||||| ||||||||||||| ||||||||||||||||    
T  4416764 acatcaaaaacgtccctgacctttctcctttccgctaaatccttcatcatcttcacctctccaaaatcatcatcatc 4416688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 6785851 - 6785761
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatc 148  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||| ||||| ||||||| ||  |||||||||||||||||||    
T  6785851 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatcatc 6785761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 17946438 - 17946496
Alignment:
Q  87 atctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||| |||||||||||||||||||| |  |||| ||||| ||||||||||||||||    
T  17946438 atctttctccttcccgctaaaaccttcatcgccttctcctctccaaaatcatcatcatc 17946496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 361771 - 361874
Alignment:
Q  67 acacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttgg 166  Q
    |||||||||||| ||||||||   ||| |||||| ||||||||  |||||| ||| | |||| ||||   ||||||||||||| || |||||||||||||    
T  361771 acacatcaaacaagtccttgactattctccttcctgctaaaactgtcaccaactttatctctccaaa---atcatcatcatcttcatcgatcaacgttgg 361867  T
Q  167 caaagat 173  Q
     ||||||    
T  361868 aaaagat 361874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 7744388 - 7744444
Alignment:
Q  89 ctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||| |||||||||||||||||||| |  |||| ||||| ||||||||||||||||    
T  7744388 ctttctccttcccgctaaaaccttcatctccttctcctctccaaaatcatcatcatc 7744444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 24207921 - 24207833
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||| ||||| ||||||| ||  |||||||||||||||||    
T  24207921 ttcactcagaagcatcaaacaagtccataacctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatca 24207833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 10716587 - 10716536
Alignment:
Q  190 aattcgtctgtgattaaggtaacaacgttcctcttctttttctttttctctg 241  Q
    ||||| |||||| |||||||||   |||||||||||||||||||||||||||    
T  10716587 aattcctctgtggttaaggtaatgtcgttcctcttctttttctttttctctg 10716536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 37417595 - 37417678
Alignment:
Q  62 ctcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||| |||||||| ||||||||||   ||| |||||||||||||||  || ||||  |||||||| ||||| ||||||||||    
T  37417595 ctcagaaacatcaaaaacgtccttgactcttctccttcccgctaaaactgtctccattctcacctctccaaaaccatcatcatc 37417678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 39841 - 39923
Alignment:
Q  63 tcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||| |||||||| || |||||||   ||| ||||||||||||||| ||| ||||  ||||| || ||||||||||||||||    
T  39841 tcagaaacatcaaaaacatccttgactcttctccttcccgctaaaactttctccattctcacccctccaaaatcatcatcatc 39923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 14000124 - 14000178
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttca 123  Q
    |||||||||||| || ||| ||||| |||||||| ||||||||||| ||||||||    
T  14000124 acatcaaacacgcccctgacctttctccttcccgttaaaaccttcatcatcttca 14000178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 15432638 - 15432726
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    |||| ||||| |||||||| || || |||  ||| | |||||||||| |||| ||||||||  ||||| || |||||||||||||||||    
T  15432638 ttcagtcagaaacatcaaaaacatctttggccttcctccttcccgctcaaactttcaccattctcacccctccaaaatcatcatcatca 15432726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 29909468 - 29909392
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||| |||||||||| | |||  |||||||||||||| | | |||| |||||| || |||||| |||||||||    
T  29909468 acatcaaaaacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaattatcatcatc 29909392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 25993824 - 25993901
Alignment:
Q  68 cacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||||||||| | | ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  25993824 cacatcaaacacgtccctaacctttctccttcccgccaaaaccttcaccatcttcacctctccaaaatcatcatcatc 25993901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 13450814 - 13450653
Alignment:
Q  68 cacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttggc 167  Q
    ||||| |||||||||| | | ||||  ||||||| ||||||||||||| |||||||||||| |||||||||| |||||   |||  |||||||||||||     
T  13450814 cacataaaacacgtccctaacctttatccttccctctaaaaccttcactatcttcacctctccaaaatcatcctcatc---tccgacgatcaacgttgga 13450718  T
Q  168 aaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttctttttctctg 241  Q
             ||||||||| |||||||| | |||| ||||||||||| ||||||||||| |||||||||||||||    
T  13450717 ---------tttttgaaggaagaattcatatgtggttaaggtaacatcgttcctcttccttttctttttctctg 13450653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 27382447 - 27382519
Alignment:
Q  73 caaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||| |||||| ||| ||||| |||||||||||||||||||| || ||||||| ||| |||||||||||||||    
T  27382447 caaaaacgtccctgacctttctccttcccgctaaaaccttcatcaacttcacccctttaaaatcatcatcatc 27382519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 4519681 - 4519768
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||||||| || ||||||| | |||  |||||||||||||| ||| ||||  |||||||| ||||||||||||||||    
T  4519681 ttcactcagaaacatcaaaaacatccttgacccttcttcttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 4519768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 50131478 - 50131528
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatc 119  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||| ||||    
T  50131478 acatcaaacacgtccctgacctttctccttcccgctaaaaccttcatcatc 50131528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 50131892 - 50131942
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatc 119  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||| ||||    
T  50131892 acatcaaacacgtccctgacctttctccttcccgctaaaaccttcatcatc 50131942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 10762897 - 10762981
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||| |||||||| || |||||||   ||| ||||||||||||||| ||| ||||  ||||| || ||||||||||||||||    
T  10762897 actcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatc 10762981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 41355994 - 41355960
Alignment:
Q  111 ttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||||||||||| ||||||||||||||||    
T  41355994 ttcaccatcttcacctctccaaaatcatcatcatc 41355960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 10372476 - 10372400
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||| || |||||||   ||| ||||||||||||||| ||| ||||  ||||| || ||||||||||||||||    
T  10372476 acatcaaaaacatccttgactcttctccttcccgctaaaacattctccattgtcacccctccaaaatcatcatcatc 10372400  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 51041745 - 51041657
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttccc-gctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||||||| ||||| |||| | ||| ||||||| |||||| | ||| ||||  ||||| || ||||||||||||||||    
T  51041745 ttcactcagaaacatcaaaaacgtcattgacccttctccttccccgctaaagctttctccattctcacccctccaaaatcatcatcatc 51041657  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 13452206 - 13452381
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgat 157  Q
    |||||| |||||||||||||| |||| |||   ||| ||||| || |||||||||||||||||||| |||| ||||| ||||   ||||||| ||  |||    
T  13452206 ttcacttagacacatcaaacaagtccctgagtcttcaccttcacggtaaaaccttcaccatcttcatctctccaaaagcatc---atcatcttcattgat 13452302  T
Q  158 caacgttggcaaagataactttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttcttttt 236  Q
    ||||||||| ||||||  | |||||| | |||| ||| ||| |  ||||||||||  ||||||||||||||||||||||    
T  13452303 caacgttggaaaagattgcgttttgatggaagatttcatcttttgttaaggtaacgccgttcctcttctttttcttttt 13452381  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 35292196 - 35292111
Alignment:
Q  60 cactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||| |||||||| || ||||||||| ||| ||||||| ||||||| ||| ||||  |||||||| ||||||||||||||||    
T  35292196 cactcagaaacatcaaaaacatccttgatccttctccttccccctaaaactttctccattctcacctctccaaaatcatcatcatc 35292111  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 35395648 - 35395724
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||||||||||||||| | |||  |||||||||||||| | | |||| |||||| || ||||||||||||||||    
T  35395648 acatcaaacacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaatcatcatcatc 35395724  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 24497166 - 24497218
Alignment:
Q  187 aagaattcgtctgtgattaaggtaacaacgttcctcttctttttctttttctc 239  Q
    |||||||||| |||| ||||||||||  ||||||||||| |||||||||||||    
T  24497166 aagaattcgtatgtggttaaggtaacgtcgttcctcttccttttctttttctc 24497218  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 42473457 - 42473369
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||| ||||| ||||||| ||  |||||||||||||||||    
T  42473457 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatca 42473369  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 29621631 - 29621541
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatc 148  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||  ||||| ||||||| ||  |||||||||||||||||||    
T  29621631 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcatc 29621541  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 40780824 - 40780912
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||  ||||| ||||||| ||  |||||||||||||||||    
T  40780824 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatca 40780912  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 25171905 - 25171832
Alignment:
Q  72 tcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||| |||||| ||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  25171905 tcaaaaacgtccctgacctttctccttcccgctaaaaccttcatcatcttcacctctccaaaatcattatcatc 25171832  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 30891431 - 30891516
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaa-ccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||||||||||||| | || |||| ||||| ||||| |||||||| |||||||||||||||||||| |||||| |||| ||||    
T  30891431 actcagacacatcaaacgcatctttgacctttctccttctcgctaaaaaccttcaccatcttcacctctccaaaattatcaccatc 30891516  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 30891562 - 30891620
Alignment:
Q  177 tttttgaagaaagaattcgtctgtgattaaggtaacaacgttcctcttctttttctttt 235  Q
    ||||||||| ||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  30891562 tttttgaaggaagaactcgtctatggttaaggtaacatcgttcctcttctttttctttt 30891620  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 4314650 - 4314574
Alignment:
Q  95 ccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttggcaaagata 174  Q
    ||||||||||||||||||||| |||||||  ||| ||||||||||||   ||||| || ||||||||||||| |||||||    
T  4314650 ccttcccgctaaaaccttcacaatcttcatttctccaaaatcatcat---catcttcatcgatcaacgttggaaaagata 4314574  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 29077644 - 29077728
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    ||||||| |||||||| || |||||||   ||| ||||||||||||||| ||| |||| |||||| || ||||||||||||||||    
T  29077644 actcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatcatcatc 29077728  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 17933661 - 17933730
Alignment:
Q  102 gctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatctccagcgatcaacgttggcaaagata 174  Q
    ||||||| |||||||||||||| |||| ||||   | ||||||||||| || ||||||||||||| |||||||    
T  17933661 gctaaaagcttcaccatcttcatctctccaaa---agcatcatcatcttcatcgatcaacgttggaaaagata 17933730  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 31209218 - 31209267
Alignment:
Q  95 ccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcat 144  Q
    ||||||||||||||| ||||||||||||| |||   ||||||||||||||    
T  31209218 ccttcccgctaaaactttcaccatcttcatctccctaaaatcatcatcat 31209267  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 29112624 - 29112700
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||| || |||||||   ||| ||||||||||||||| ||| ||||  ||||| || ||||||||||||||||    
T  29112624 acatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatc 29112700  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 18183761 - 18183674
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||||| |||||||| ||||| |||| | ||| ||||||||||||||| ||| ||||  |||||||| ||||||||||||||||    
T  18183761 ttcactcagaaacatcaaaaacgtcattgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 18183674  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 51122243 - 51122298
Alignment:
Q  89 ctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcat 144  Q
    ||||| |||||||||||||||||||| || |||| ||||| |||||||||||||||    
T  51122243 ctttctccttcccgctaaaaccttcatcaccttctcctctccaaaatcatcatcat 51122298  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 45380794 - 45380706
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    |||| ||||| |||||||| || ||||||| ||||| | || |||||||||| ||| ||||  ||||| || |||||||||||||||||    
T  45380794 ttcagtcagaaacatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcatcatca 45380706  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 42134792 - 42134882
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatcatc 148  Q
    |||| ||||| |||||||| || ||||||| |||||  ||| |||||||||| ||| ||||  ||||| || |||||||||||| ||||||    
T  42134792 ttcagtcagaaacatcaaaaacatccttgacctttcatctttccgctaaaactttctccattctcacccctccaaaatcatcataatcatc 42134882  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 43868930 - 43868980
Alignment:
Q  69 acatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatc 119  Q
    |||||| |||||||| ||| ||||| |||||||||||||||||||| ||||    
T  43868930 acatcatacacgtccatgacctttctccttcccgctaaaaccttcatcatc 43868980  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 1442794 - 1442882
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    ||||||||||  ||||||||| |||| | | ||||| |||||||||  ||||  ||||| ||||||| ||  |||||||||||||||||    
T  1442794 ttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatca 1442882  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 44158096 - 44158184
Alignment:
Q  58 ttcactcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatca 146  Q
    |||| ||||| |||||||| || ||||||| ||||| |||| |  ||||||| ||| ||||  |||||  |||||||||||||||||||    
T  44158096 ttcagtcagaaacatcaaaaacatccttgacctttcacctttctactaaaactttctccattctcaccctttcaaaatcatcatcatca 44158184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 47269264 - 47269180
Alignment:
Q  61 actcagacacatcaaacacgtccttgatctttcgccttcccgctaaaaccttcaccatcttcacctcttcaaaatcatcatcatc 145  Q
    |||||||  ||||||| || |||||||   ||| ||||||||||||||| ||| |||| |||||| || |||||||||| |||||    
T  47269264 actcagaaccatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatcctcatc 47269180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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