View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0605_low_18 (Length: 272)
Name: NF0605_low_18
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0605_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37593690 - 37593494
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
37593690 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgcc |
37593591 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37593590 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattct |
37593494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37696081 - 37695885
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
37696081 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgcc |
37695982 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37695981 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgacggttattactataatgattct |
37695885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37532586 - 37532390
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
37532586 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctaacaacaattttagtgggcccttgcc |
37532487 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37532486 |
aatatcatgcatcaagaactttaaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgcgggttattactataatgattct |
37532390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37823390 - 37823194
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
37823390 |
ataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgcc |
37823291 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37823290 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgagtgacgaccaaattggtttgcaatacatgggtgactcttattactacaatgattct |
37823194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 37401672 - 37401868
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
37401672 |
ataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgcc |
37401771 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37401772 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattct |
37401868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37639232 - 37639036
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
37639232 |
ataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgcc |
37639133 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37639132 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattct |
37639036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 37702166 - 37702023
Alignment:
| Q |
46 |
atcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaac |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
37702166 |
atcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgcctctaacaacaattttagtggccccttgccaac |
37702067 |
T |
|
| Q |
146 |
atcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37702066 |
atcatgcatcaagaactttcaaggaatgattaatgtaaatgaca |
37702023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 37710990 - 37710823
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
37710990 |
ataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgcc |
37710891 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||| |
|
|
| T |
37710890 |
agcatcatgcatcaagaactttcaaggaatgatgaaggtgaatgacaaaaaaattgatctgcaataca |
37710823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 37393554 - 37393723
Alignment:
| Q |
46 |
atcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaac |
145 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| | |||| | || |||||||||||||| ||||||||||| |
|
|
| T |
37393554 |
atcttcatgggtcaatcacatgttctagcaccaagcatccatttcctaagttgagaatttatgatgtctctagtaacaattttagtggccccttgccaac |
37393653 |
T |
|
| Q |
146 |
atcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggt |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
37393654 |
atcatgcttcaagaactttcaaggaatgatggatgtgaataacagccaaattggtttgcaatacatgggt |
37393723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 37383000 - 37383196
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||| |||||||| |||||||| || ||||||||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||| |||||||||||| |
|
|
| T |
37383000 |
ataaacttcatggcgcaatcacatgctctagcaccaaacatccatttcccaagttgagaatttttgatgtctctaacaacaattttattgggcccttgcc |
37383099 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
37383100 |
aacatcgtgcatcaagaattttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtaagtccaattactataatgattct |
37383196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37435196 - 37435000
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||| ||| ||||| ||||||| ||||||| |||||| ||| | ||| ||||||| ||||||||| | | | |||||||||||||| ||||||| |
|
|
| T |
37435196 |
ataaacttaatggttcaatcacctgttctaacaccaaccatcctttttctaagttaagaatttttgacatcttcggtaacaattttagtggatccttgcc |
37435097 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
37435096 |
aacatcatgtatcaagaactttcaaggaatgatgaatgtgaatgatagccagattggtttgcaatacatgggtaagaacaattactataatgattct |
37435000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 37428529 - 37428342
Alignment:
| Q |
51 |
catggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatcat |
150 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||| |||| || |||||||||||||| | | | ||| || | ||||||||| |||||||| ||| ||| |
|
|
| T |
37428529 |
catggtacaatcacttgttctatgaccaaacatccattccc-aagttgagaattttcgacatctataataaaatttttagtggtcccttgccgacaacat |
37428431 |
T |
|
| Q |
151 |
gcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||||| |
|
|
| T |
37428430 |
gcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactataatgattct |
37428342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 37413839 - 37413911
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttg |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
37413839 |
ataatcttcatggtgcaatcacctgttctagcacaaagcatacatttcccaagttgagaatattttatgtttg |
37413911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 14552855 - 14552686
Alignment:
| Q |
46 |
atcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaac |
145 |
Q |
| |
|
||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||| |
|
|
| T |
14552855 |
atcttcacggagcaatcacctgttctagcatcaagcattcatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaac |
14552756 |
T |
|
| Q |
146 |
atcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14552755 |
atcatgcatcaagaactttcaaggaatgatgaacgtgaatgacagccaaattggtttgcaatacatgggt |
14552686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 16843670 - 16843837
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||| |
|
|
| T |
16843670 |
ataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgcc |
16843769 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
16843770 |
aacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaataca |
16843837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 24218408 - 24218601
Alignment:
| Q |
46 |
atcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaac |
145 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || |||||||| ||| ||||||||| |||| | | || ||||| |||| ||| ||||||| |
|
|
| T |
24218408 |
atcttcatggtggaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtctctggtaataatttccgtggccccgtgccaac |
24218507 |
T |
|
| Q |
146 |
atcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||| ||| ||||||| |||||||||||||| |||||||||| || || |||||||||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
24218508 |
atcttgcctcaagaattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgggtaaggccaattattataatgattct |
24218601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 16846338 - 16846533
Alignment:
| Q |
43 |
ataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgcc |
142 |
Q |
| |
|
|||| ||| ||||| ||||||| |||||||||||||||||| ||||||| || ||||||||||| | | | | ||||| || ||||| || ||||| |
|
|
| T |
16846338 |
ataaactttatggttcaatcacatgttctagcaccaagcatccatttccaaa-ttgagaattttggacatcttcgataacaaattcagtggaccgttgcc |
16846436 |
T |
|
| Q |
143 |
aacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgagggttattactataatgattct |
239 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| | |||||| | ||| ||||||||| |||| ||| ||| ||||||||||||||||| |
|
|
| T |
16846437 |
aacatcatgtatcaagaattttcaaggaatgatgaacgcgaatgataataaaactggtttgcagtacatgggaaaggtcaattactataatgattct |
16846533 |
T |
|
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