View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0605_low_3 (Length: 445)
Name: NF0605_low_3
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0605_low_3 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 342434 - 342816
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
342434 |
aatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggc |
342533 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
342534 |
tctctttctctcttgctctttgttgttcttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggagaagcaagccaaagttgacttac |
342633 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcat----gcaccacaccaagtgtcccttgcatgcaccacaa |
306 |
Q |
| |
|
|||||| |||||| |||||| |||| | ||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
342634 |
atgcatgaagacatttgtcatttgcctttcatgc-aaacaccaagtgtcccttgcaatgcatgcacgcaccacaccaaatgtcccttgcatgcaccacaa |
342732 |
T |
|
| Q |
307 |
catgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| |||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
342733 |
caaatgtc--------------actcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
342816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 25857347 - 25857729
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
25857347 |
aatatatctcttaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggc |
25857446 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25857447 |
tctctttctctcttgctctttgttgttcttctattgtggtgtgttgtgaatgcttgctcatggtcctatttataggagaagcaagccaaagttgccttac |
25857546 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcat----gcaccacaccaagtgtcccttgcatgcaccacaa |
306 |
Q |
| |
|
|||||| |||||| |||||| |||| | ||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
25857547 |
atgcatgaagacatttgtcatttgcctttcatgc-aaacaccaagtgtcccttgcaatgcatgcacgcaccacaccaaatgtcccttgcatgcaccacaa |
25857645 |
T |
|
| Q |
307 |
catgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| |||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25857646 |
cacatgtc--------------actcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
25857729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 4842867 - 4843245
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
4842867 |
aatatatctctcaatttttaaggaacactctcacaaattggctcaatatttctctcacaagaaaactctttatgaggatgacttttctcttgagcaaggc |
4842966 |
T |
|
| Q |
111 |
tctctttctctcttgctcatt-gttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctta |
209 |
Q |
| |
|
|||||||||||||||||| || ||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
4842967 |
tctctttctctcttgctcttttgttgttcttttcttgtggtgtgttttgaatgcttgttcatggtcctatttataggagaagcaagtcaaagttgcctta |
4843066 |
T |
|
| Q |
210 |
catgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacat |
309 |
Q |
| |
|
||||||| ||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| | |
|
|
| T |
4843067 |
catgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttgctatgcatgcaccacaccaagtgtctct--catgcatta------ |
4843158 |
T |
|
| Q |
310 |
gtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
4843159 |
--------caccatgtgttactcatacactacaccatgtgtacacaatgcaccttgctacttctcatcacatgcaaccttccatcttgccaaatg |
4843245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 4835792 - 4836041
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
4835792 |
aatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggc |
4835891 |
T |
|
| Q |
111 |
tctctttctctcttgctc-attgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctta |
209 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4835892 |
tctctttctctcttgctcttttgttgttcttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggagaagcaagccaaagttgcctta |
4835991 |
T |
|
| Q |
210 |
catgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtc |
259 |
Q |
| |
|
||||||| ||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
4835992 |
catgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtc |
4836041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 24379497 - 24379860
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
24379497 |
aatatatctctcaatttgtaaggaacactctcataaattggctcactatttctttcacaagaaaactctctatgaggatgacttttctctcgagcaagac |
24379596 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24379597 |
tctctttctct--------ttgttgttcttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttatagccgaaggaagccaaagttgccttac |
24379688 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
|||||| |||||| ||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
24379689 |
atgcatgaagacatttgcc--------tttatgcaaaacaccaagtgtcccttgcaatgcatgcaccacacaaagtgtctcttgcatgcaccacaacata |
24379780 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
24379781 |
tgtc--------------actcatacactacaccatgtgtacaccatgcatcttgctgcttgttatcagatgcaaccttccattttgtcaaatg |
24379860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 4603656 - 4603267
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| | |
|
|
| T |
4603656 |
aatatatctttcaatttgtaaggaacacttaca--aattggctctctatttctctcacaagaaaactctttatgaagataacttttctcttgagcaagac |
4603559 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
||||||||| ||||||| | ||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
4603558 |
tctctttctatcttgcttttcgttgttcttatcttgtggtgtgttgtgaatgcttgttcatgatcctatttataggagaagcaaaccaaagtttccttac |
4603459 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
||||| |||||| |||||| |||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4603458 |
atgcacgaagacatttgtcatttgcctttcatgcacaacaccaagtgtcccttgcaatgcatgcacaacaccaagtgtcccttgcatgcaccaacacatg |
4603359 |
T |
|
| Q |
311 |
tgtcact---------caacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaa |
401 |
Q |
| |
|
||||||| || ||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4603358 |
tgtcactcatacactacaccatgtgttactgatacac-----------tacaccatgcatcttgctacttgtcatcacatgcaaccttccattttgtcaa |
4603270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 38994257 - 38994536
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaag-aaaactctctatgatgatgacttttctcttgagcaaag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
38994257 |
aatatatctctcaatttgtaaggaacactatcacaaattggctcattatttctctcacaaggaaaactctctatgaggattacttttcttttgagcaaaa |
38994356 |
T |
|
| Q |
110 |
ctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctta |
209 |
Q |
| |
|
||| |||||||||||| | ||||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
38994357 |
ctccctttctctcttgttttttgttgttcttctcttgtggtgtgttgtgattacttgctcatggtcatatttataggagaagcaagccaaagttgtctta |
38994456 |
T |
|
| Q |
210 |
catgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtc |
289 |
Q |
| |
|
| ||||| |||| |||||||| ||||| | ||||||||||| |||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
38994457 |
cgtgcatgaagaaacttgtcatttgcatttcatgcaaaacatcaagtgtcccatgcaatgcatgcaccacaccatgtgtc |
38994536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 27341148 - 27341534
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctctt--gagcaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||| ||||| |
|
|
| T |
27341148 |
aatatatctctcaatttgtaaggaacactctcacaggttggctcactatttctctcacaaagaaactctatatgaggataacttttctcttttgagcatg |
27341247 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctt |
208 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
27341248 |
actctctttctctcttgctt-ttgttgttcttct-ttgtggtgtgttgtgaatgcttgcccatggtcccatttataggagaagcaagtcaaagttgcctt |
27341345 |
T |
|
| Q |
209 |
acatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtccct-----tgcatgcacca |
303 |
Q |
| |
|
|||||||| |||||||||| || || | | || ||||||||||||||| |||||| |||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
27341346 |
acatgcatgaagacacttgccattttcctttcaagcaaaacaccaagtgccccttgtaatgcatgcaccacaccatgtgtctcttgcaatgcatgcacca |
27341445 |
T |
|
| Q |
304 |
caacatgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaat |
403 |
Q |
| |
|
||||||| || ||||||| ||| |||||||||||||||| || ||||||||||||||||| | |||||| |||| ||||||||||| |
|
|
| T |
27341446 |
caacatg---------------gtaactcatatactacaccatgtgtacaccatgccccttgctacttgtcatctcgtgcaactttcccttttgtcaaat |
27341530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 139 - 403
Target Start/End: Complemental strand, 17845726 - 17845475
Alignment:
| Q |
139 |
ttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttacatgcatcaagacacttgtcacttgcaat |
238 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||| |||||||||| ||| ||||||||||||| |||| | |
|
|
| T |
17845726 |
ttctcttgtggtgtgttatgaatgcttgtccatggtcctatttataggacaagcaagttaaagatgccttacatacatgaagacacttgtcatttgcctt |
17845627 |
T |
|
| Q |
239 |
gcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatgtgtcactcaacatgtgttactcatacac |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| | ||| | ||||||||||||||||||||| |
|
|
| T |
17845626 |
tcatgcaaaacaccaaatgtcccttgcaatgcatgcaccacaccacatgtctcttgca--aagcacta-----------caacatgtgttactcatacac |
17845540 |
T |
|
| Q |
339 |
tccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaat |
403 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||| |
|
|
| T |
17845539 |
cataccatgtgtacaccatgcaccttattacttgtcttcacatgcaaccttctattttatcaaat |
17845475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 403
Target Start/End: Original strand, 13465994 - 13466224
Alignment:
| Q |
161 |
tgcttgctcatggtcctatttataggataagcaagccaaagttgccttacatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||| ||| | |||||||||||| ||||||| |
|
|
| T |
13465994 |
tgcttgctcatggtcctatttataggagaaacaagccaaagttatcttacatgcatgaagacacttgtcatttgtctttcatgcaaaacacttagtgtcc |
13466093 |
T |
|
| Q |
261 |
cttgcaatgcatgcaccacaccaagtgtcccttgc-atgcaccacaacatgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgc |
359 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||| ||| || |||||||||||||||||||| | |||||| ||||||||| | |
|
|
| T |
13466094 |
cttgcaatgcatgcaccacaccatgtgtcacttgcaatgc-gtacacca---------caacatgtgttactcatacattacaccatatgtacaccatac |
13466183 |
T |
|
| Q |
360 |
accttgctacttgtcatcacatgcaaccttccattttgtcaaat |
403 |
Q |
| |
|
|||| |||| || |||||||||||||||| |||||||||||| |
|
|
| T |
13466184 |
acct---tactagttatcacatgcaaccttctattttgtcaaat |
13466224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 321 - 404
Target Start/End: Original strand, 4836057 - 4836140
Alignment:
| Q |
321 |
catgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4836057 |
catgtgttactcatacactacaccatgtgtacaccatgcaccttgctacttgtcatcacatgcaaccttccatcttgtcaaatg |
4836140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 38994602 - 38994689
Alignment:
| Q |
318 |
caacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttcca-ttttgtcaaatg |
404 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
38994602 |
caacatgtgttactcatacactacttcatgtgtacttcatgcaccttgctacttgtcatcacatgcaacattccatttttgtcaaatg |
38994689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 17845835 - 17845741
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctca----taaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctctt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||| ||||||| ||| | ||| ||||||||||| |
|
|
| T |
17845835 |
aatatatctctcaatttgtaaggaacactctcataattaaattgactcaatatttctctcacaaggaaactctttattaggatcacttttctctt |
17845741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 13465179 - 13465264
Alignment:
| Q |
15 |
tatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| | |||||| |||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
13465179 |
tatctctcaatttgtaaggaacactcttacaaattggttcactatt--tctcacaagaaaacattctatgaggatcacttttctcttg |
13465264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 13465258 - 13465309
Alignment:
| Q |
119 |
tctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctca |
170 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
13465258 |
tctcttgctttttgttgttcttctcttgtgttgtgttgtgaatgcttgctca |
13465309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 38994556 - 38994592
Alignment:
| Q |
318 |
caacatgtgttactcatacactccaccatgtgtacac |
354 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |
|
|
| T |
38994556 |
caacatgtgttactcatacactacatcatgtgtacac |
38994592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 54967429 - 54967806
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
54967429 |
aatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggt |
54967528 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54967529 |
tctctttctctcttgctctttgttgttcttctcttatggtgtgttgtgaatgcttgatcatggtcctatttataggaggagcaagccaaagttgccttac |
54967628 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
|||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
54967629 |
atgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtctct--catgcatta------- |
54967719 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||| ||| | |||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
54967720 |
-------caccatgtgttactcatacactacaccatgtgtacaccatgcatcctgctacttatcatcacatgcaaccttccatcttgtcaaatg |
54967806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 54980061 - 54980438
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
54980061 |
aatatatctctcaatttgtaaggaacactctcacaaattggctcgctatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggt |
54980160 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54980161 |
tctctttctctcttgctctttgttgttcttctcttatggtgtgttgtgaatgcttgatcatggtcctatttataggaggagcaagccaaagttgccttac |
54980260 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
|||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
54980261 |
atgcatgaagacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtctct--catgcatta------- |
54980351 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54980352 |
-------caccatgtgttactcatacactacaccatgtgtacaccatgcatcctgctacttgtcatcacatgcaaccttccatcttgtcaaatg |
54980438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 44782743 - 44783118
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
44782743 |
aatatatctctcaatttgcaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggc |
44782842 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44782843 |
tctctttctct--tgctctttgttgttcttctcttgtggtgtgttttgaatgcttgctcatggtcctatttataggagaagcaagccaaagttgccttac |
44782940 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
|||||| |||||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| | |
|
|
| T |
44782941 |
atgcatgaagacatttgtcatttgccttttatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaaatgtctct--catgcatta------- |
44783031 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
44783032 |
-------caccatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcaccacatgcaaccttccatcttgtcaaatg |
44783118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 402
Target Start/End: Complemental strand, 39298783 - 39298400
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctc--ttgagcaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||| |||| ||| ||||||||| |||||||| |
|
|
| T |
39298783 |
aatatatctctcaatttgtaagga-cactctcacaaattggctcactatttctctcacaaaggaactctccatgaggatcacttttctcatttgagcaag |
39298685 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctt |
208 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
39298684 |
actctctttctctcttgctttttgttgttcttatcttgtggtgtgttgtgaatgcttactcatggttctatttataggagaagcaagccaaagttcattt |
39298585 |
T |
|
| Q |
209 |
acatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgc-atgcaccacaac |
307 |
Q |
| |
|
|||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||| | |
|
|
| T |
39298584 |
acatgcatgaagacacttgtcatttgcttttcatgcaaaacaccaagtgtcccttgcaaaacatgcatcacaccatgtgtctcttgcaatg--------c |
39298493 |
T |
|
| Q |
308 |
atgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaa |
402 |
Q |
| |
|
||| ||| |||||| |||||||| |||||| ||| |||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
39298492 |
atgcatca--caacatatgttactcgtacactacactatgtgtacaccatgcaccttaatacttatcatcacatgcaatcttccattttgtcaaa |
39298400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 17645771 - 17645401
Alignment:
| Q |
15 |
tatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctctt--gagcaaagctc |
112 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||||| ||||| || ||||| ||||| || || | || |
|
|
| T |
17645771 |
tatctctcaatttgtaaggaacactcttacaaattggctcactatttatctcacaaggaaactctttatgagaatcactttcctcttttgattaagggtc |
17645672 |
T |
|
| Q |
113 |
tctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagtt-gccttaca |
211 |
Q |
| |
|
| || ||||||| | ||||||| || ||| ||||||||||||||||| || ||||||| || || |||||||||||| |||||||| |
|
|
| T |
17645671 |
ttcttttctcttgttttttgttgttctactcctgtggtgtgttgtgaattctagctcatgctcgaat------------caagccaaagtttgccttaca |
17645584 |
T |
|
| Q |
212 |
tgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgc-atgcaccacaacatg |
310 |
Q |
| |
|
||||| || |||||||||| |||| | |||||||||||||||||||||||| ||||| ||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
17645583 |
tgcatgaacacacttgtcatttgcctttcatgcaaaacaccaagtgtcccttccaatgaatgcaccgcaccatgtgtctcttgcaatgca---------- |
17645494 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaat |
403 |
Q |
| |
|
|| | |||||| ||||||||||||||| ||| | | ||||||| |||| |||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
17645493 |
tgcaccacaacatatgttactcatacactacacaaactatacaccatacaccctgctacttgtgatcacatgcaaccttcgagtttgtcaaat |
17645401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 404
Target Start/End: Complemental strand, 36167597 - 36167221
Alignment:
| Q |
9 |
ataatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36167597 |
ataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaag |
36167498 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctt |
208 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36167497 |
gctctcttt--ctcttgctctttgttgttcttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggagaagcaagccaaagttgcctt |
36167400 |
T |
|
| Q |
209 |
acatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaaca |
308 |
Q |
| |
|
|||||||| |||||| |||| | || | | ||||| ||||||||||||||||||||| |||||||||||||||||||||| || |||||| | |
|
|
| T |
36167399 |
acatgcatgaagacatttgttattttcctttcatgc-aaacaccaagtgtcccttgcattgcatgcaccacaccaagtgtctct--catgcatta----- |
36167308 |
T |
|
| Q |
309 |
tgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36167307 |
---------caacatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcacatgcaaccttccatcttgtcaaatg |
36167221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 41481596 - 41481222
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
41481596 |
aatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttttctcttgagcaaggc |
41481497 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41481496 |
tctcttt--ctcttgctctttgttgttcttctcttgtggtgtgttatgaatgcttgctcatggtcctatttataggagaagcaagccaaagttgccttac |
41481399 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
|||||| |||||| |||| | || | | ||||| ||||||||||||||| |||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
41481398 |
atgcatgaagacatttgtaatttacctttcatgc-aaacaccaagtgtccattgcaatgcatgcaccacaccaagtgtctct--catgcatta------- |
41481309 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41481308 |
-------caacatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcacatgcaaccttccatcttgtcaaatg |
41481222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 18951337 - 18951718
Alignment:
| Q |
9 |
ataatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaa |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| | |||||| |||| ||||||||||||| || ||||||||||||||| | ||| |
|
|
| T |
18951337 |
ataatttatctctcaatttgtaaggaacactctcacaaattggctcattatttccctcaagagaaaactctctacgaggatgacttttctcttaaacaag |
18951436 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctt |
208 |
Q |
| |
|
|||| ||||||||||| | ||||||| ||||||||||||| ||| ||||||||||||| |||||| ||||||||||| || |||||||||| |||||| |
|
|
| T |
18951437 |
actctttttctctcttgatttttgttgttcttctcttgtggtttgtcgtgaatgcttgcttatggtcttatttataggagaaacaagccaaagctgcctt |
18951536 |
T |
|
| Q |
209 |
acatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaaca |
308 |
Q |
| |
|
|||||||| | |||||||||| || | | |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18951537 |
acatgcatgagaacacttgtcattttcctttcatgcaaatcaccaattgtcccttgcaatgcatgcaccacaccaagtgtcccttacatgcaccacaaca |
18951636 |
T |
|
| Q |
309 |
tgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18951637 |
tgtgtc--------------actcatacactacaccatgtgtacaccatgcatcttgctacttttcatcacatgcaaccttccattttgtcaaatg |
18951718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 165 - 403
Target Start/End: Complemental strand, 18966081 - 18965857
Alignment:
| Q |
165 |
tgctcatggtcctatttataggataagcaagccaaagttgccttacatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttg |
264 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||| |||||||||||||| |||||| |||||| || | | |||||||| |||||| ||||||||| |
|
|
| T |
18966081 |
tgctcatggtcttatttataggagaaggaagccaaagctgccttacatgcatgaagacatttgtcattttcctttcatgcaaatcaccaactgtcccttg |
18965982 |
T |
|
| Q |
265 |
caatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcacctt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
18965981 |
caatgcatgcaccacaccaagtgtcccttgcatgcaccaaaacatgtgtca--------------ctcatacactacaccatgtgtacaccatgcatctt |
18965896 |
T |
|
| Q |
365 |
gctacttgtcatcacatgcaaccttccattttgtcaaat |
403 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
18965895 |
gctacttgtcatcacatactacgttccattttgtcaaat |
18965857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 2717 - 2341
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| || |
|
|
| T |
2717 |
aatatatctctcaatttgtaaggaacgctctcacaaattggctcactatttctctcacaagaaaactctctatgaggatgacttt-ctcatgagcaaggc |
2619 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2618 |
tctctttttctcttgctctttgttgttcttctcttgtggtgtgttttgaatgcttgatcatggtcctatttataggaggagcaagccaaagttgccttac |
2519 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaacatg |
310 |
Q |
| |
|
|||||| ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| | |
|
|
| T |
2518 |
atgcatgaagacacttgtcatttgcctttcatgcaagacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtctct--catgcatta------- |
2428 |
T |
|
| Q |
311 |
tgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2427 |
-------caccatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcacatgaaaccttccatcttgtcaaatg |
2341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 9757430 - 9757718
Alignment:
| Q |
9 |
ataatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
9757430 |
ataatatatctctcaatttgtaaggaacactctcacaaattggctcactatttctctcaaaagaaaactctctatgaagatgacttctctcttgagcaag |
9757529 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctt |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
9757530 |
gctctctttctctcttgctc----------ttctcttgtggtgtttt-tgaatgcttgctcatggtcctatttataagagaagccagccaaagttgcctc |
9757618 |
T |
|
| Q |
209 |
acatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttgcatgcaccacaaca |
308 |
Q |
| |
|
|||||||| |||||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9757619 |
acatgcatgaagacatttgtcatttgcctttcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagggtcccttgcatgcaccacaaca |
9757718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 42683050 - 42683427
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||||||| | |
|
|
| T |
42683050 |
aatatatctctcaatttgtaaggaacactcttacaaattggctcactatttctctcacaagaaaactctttgtgaggatgagttttctcttgagcaagac |
42683149 |
T |
|
| Q |
111 |
tctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttac |
210 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
42683150 |
tctctctctctcttgctttttgttgttcttatcctgtggtgtgttgtgaatgcttgctcatggtcctatttataggagaagcaagtcaaagttgtcttac |
42683249 |
T |
|
| Q |
211 |
atgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtcccttg-catgcaccacaacat |
309 |
Q |
| |
|
|||||| ||||||||||||| ||| | ||| |||||||| |||||| |||||||||||||||| ||||||| | ||| |||| ||| | || ||| |
|
|
| T |
42683250 |
atgcatgaagacacttgtcatttgtctttcatacaaaacacgaagtgt-ccttgcaatgcatgcaacacaccacgcgtctcttgtaatgta-tgcaccat |
42683347 |
T |
|
| Q |
310 |
gtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgt |
398 |
Q |
| |
|
| |||||||||||||||| ||| || ||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
42683348 |
g---------acatgtgttactcatatactacatcatgtgtacaccatgcaccttgttacttgtcatcacatacaacctttcattttgt |
42683427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 37287100 - 37287371
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctctt--gagcaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||| |||| ||| ||||||||| ||| ||| ||||||||| || | |||| | || |||||| |
|
|
| T |
37287100 |
aatatatctctcaatttgtaaggaacattaacacaaatcggctcactgtttctctcagaaggaaattctctatgaacatcaattttatgttttgagcaag |
37287199 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgcctt |
208 |
Q |
| |
|
|| ||||||||||||||| ||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
37287200 |
actttctttctctcttgctttttgttattcttttcttgtggtgtgttgtgaatgcttactcatggtcctatttataggagaagcaagccaaagttgtctt |
37287299 |
T |
|
| Q |
209 |
acatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccaca |
280 |
Q |
| |
|
|||||||| ||||||||||||| |||| | |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
37287300 |
acatgcatgaagacacttgtcatttgcctttcatgcaaaacactaagtgtcccttgaaatgcatgcaccaca |
37287371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 3346438 - 3346352
Alignment:
| Q |
318 |
caacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3346438 |
caacatgtgtcactcatacactacaccatatgtacatcatgcaccttgctatttgtcatcacaagcaaccttccattttgtcaaatg |
3346352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 404
Target Start/End: Original strand, 37287370 - 37287456
Alignment:
| Q |
318 |
caacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | ||||||| | | | |||||||||||||||||| ||||| ||||||| |
|
|
| T |
37287370 |
caacatgtgttactcatacactacaccatgtgtacactatgcaccttaccatatctcatcacatgcaaccttctattttatcaaatg |
37287456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 3346541 - 3346428
Alignment:
| Q |
174 |
tcctatttataggataagcaagccaaagttgccttacatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatg |
273 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||| ||||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||||||| ||| |
|
|
| T |
3346541 |
tcctatttataggagaagtaagttaaagttgtcttacatgcataaagacacttgtcatttgactttcatgtaaaacatcaagtgtcccttgcaat--atg |
3346444 |
T |
|
| Q |
274 |
caccacaccaagtgtc |
289 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
3346443 |
caccacaacatgtgtc |
3346428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 38394082 - 38394164
Alignment:
| Q |
322 |
atgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| | |||| |||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
38394082 |
atgtgttactcatacaccacactatgtgtacatcgtgcacgttgctacttgtcatcacatgcaacattctattttatcaaatg |
38394164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 9757751 - 9757787
Alignment:
| Q |
366 |
ctacttgtcatcacatgcaaccttccattttgtcaaa |
402 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |
|
|
| T |
9757751 |
ctacttgtcatcacatactaccttccattttgtcaaa |
9757787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 37037905 - 37037643
Alignment:
| Q |
18 |
ctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagctctcttt |
117 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
37037905 |
ctctcaatttataagaaacactctcacaaattggctcactatttctctcacaagaaaactctctatgaggatcacttttctcttgagcaaggctctcttt |
37037806 |
T |
|
| Q |
118 |
ctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttacatgcatc |
217 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
37037805 |
ctctcttgctttttgttgtttttctcttgcggtgtgttgtgaatgcttgctcatggtcctatttataggagaagcaagacaaagttgtcttacatgcatg |
37037706 |
T |
|
| Q |
218 |
aagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccaca |
280 |
Q |
| |
|
|| |||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37037705 |
aaaacacttgtcatttgtctttcatgcaaaacaccaagtgtcccttccaatgcatgcaccaca |
37037643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 37037644 - 37037558
Alignment:
| Q |
318 |
caacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37037644 |
caacatgtgttgctcatacactacaccatgtgtacaccatgcaccttactacttgtcatcacatgcaacctttcattttgtcaaatg |
37037558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 16698473 - 16698169
Alignment:
| Q |
15 |
tatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctcttgagcaaagctctc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||| || |
|
|
| T |
16698473 |
tatctctcaatttgtaagaaacactctcacgaattgggtccctatttctcccacaagaaaactctctatgaggatcacttttctcttgagcaaggctatc |
16698374 |
T |
|
| Q |
115 |
tttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaagccaaagttgccttacatgc |
214 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
16698373 |
ttcctctcttgctttttgttgttcttctcttgtggtgtattgtgaatgcttgatcatgatcctatttacaggagaagcaagcaaaagttgccttacatgc |
16698274 |
T |
|
| Q |
215 |
atcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtccct-----tgcatgcaccacaacat |
309 |
Q |
| |
|
|| ||||||||||||| ||| | | ||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
16698273 |
atgaagacacttgtcatttggttttcgtgcaaaacatcaagtgtcccttgcaatgcatgcaccacaccatgtgtctcttgcaatgcatgcaccacaacat |
16698174 |
T |
|
| Q |
310 |
gtgtc |
314 |
Q |
| |
|
||||| |
|
|
| T |
16698173 |
gtgtc |
16698169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 22764123 - 22764069
Alignment:
| Q |
350 |
tacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22764123 |
tacaccatgcatcttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
22764069 |
T |
|
Back To:
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Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 27642099 - 27641915
Alignment:
| Q |
11 |
aatatatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactctctatgatgatgacttttctc--ttgagcaaa |
108 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||| ||| ||||| | || || ||| ||||||||| |||||||| |
|
|
| T |
27642099 |
aatatatctctctatttgtaaggaacactctcacaaattgacttcctatttctctcaaaaggaaactttttacgaggatcacttttctcttttgagcaag |
27642000 |
T |
|
| Q |
109 |
gctctctttctctcttgctcattgttgtccttctcttgtggtgtgttgtgaatgcttgctcatggtcctatttataggataagcaa |
194 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||| |
|
|
| T |
27641999 |
actctctttctctcttgct-tttgttgttcttctcttgtggtgtgttgtgaatgcttgattatggtcttatttataggagaagcaa |
27641915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 27641434 - 27641349
Alignment:
| Q |
319 |
aacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaaccttccattttgtcaaatg |
404 |
Q |
| |
|
|||||||||||||||||||| ||| || || | |||| |||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27641434 |
aacatgtgttactcatacacaacactatctgcataccatgcacattgctacttgtcatcacatgcaaccttccatgttgtcaaatg |
27641349 |
T |
|
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Target: scaffold0045 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 404
Target Start/End: Original strand, 26799 - 27004
Alignment:
| Q |
190 |
agcaagccaaagttgccttacatgcatcaagacacttgtcacttgcaatgcatgcaaaacaccaagtgtcccttgcaatgcatgcaccacaccaagtgtc |
289 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| | || | | |||||||||||||||||||| |||||| |||||||||||||| || || |
|
|
| T |
26799 |
agcaagccaaagttgcctcacatgcatgaagacacttgttattttcctttcatgcaaaacaccaagtgtcagttgcaacacatgcaccacaccatgtatc |
26898 |
T |
|
| Q |
290 |
ccttgcatgcaccacaacatgtgtcactcaacatgtgttactcatacactccaccatgtgtacaccacgcaccttgctacttgtcatcacatgcaacctt |
389 |
Q |
| |
|
|||||| ||||| ||| |||| |||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26899 |
tcttgcaat-------acatgcatcat--aacacgtgttactcatacactacactatttgtacaccatacaccttgctacttgtcatcacatgcaacctt |
26989 |
T |
|
| Q |
390 |
ccattttgtcaaatg |
404 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26990 |
tcattttgtcaaatg |
27004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 26708 - 26771
Alignment:
| Q |
15 |
tatctctcaatttgtaaggaacactctcataaattggcttactatttctctcacaagaaaactct |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
26708 |
tatctctcaatttgtaaggaacactctcacaaattggctcactattt-tctcacaaaaaaactct |
26771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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