View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0605_low_7 (Length: 375)
Name: NF0605_low_7
Description: NF0605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0605_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 26 - 335
Target Start/End: Complemental strand, 26993120 - 26992811
Alignment:
| Q |
26 |
tcaagagagaatgaaacggttactcatgttatgggaagaagtgattattatgtgtgatagaaatctgagactatacataaaagaaagtgaacaagtactc |
125 |
Q |
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| T |
26993120 |
tcaagagagaatgaaacggttactcatgtaatgggaagaagtgattattatgcatgatagaaatctgagactatgcataaaagaaagtgaacaaatactc |
26993021 |
T |
|
| Q |
126 |
caaaatttttgcaaaccaaatgccaaggaggaaagagaagcaagccaagcgcaattggtttaactcccacgactacttttggaatcccgctctccaccaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26993020 |
caaaatttttgcaaaccaaatgccaaggaggaaagagaagcaagccaagcgcaattggtttaactcccacgactacttttggaatcccgctctccaccaa |
26992921 |
T |
|
| Q |
226 |
gctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattgct |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992920 |
gctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattgct |
26992821 |
T |
|
| Q |
326 |
attctctgct |
335 |
Q |
| |
|
|||||||||| |
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| T |
26992820 |
attctctgct |
26992811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 1755394 - 1755524
Alignment:
| Q |
204 |
ttggaatcccgctctccaccaagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggta |
303 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |||||||| ||||| |
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| T |
1755394 |
ttggaatctcgctctccaccaagctccaatactctttcgatctcaagagattttccatcaacatagaccaatgatcatagt-gaccatcaaatcaaggta |
1755492 |
T |
|
| Q |
304 |
tggtaggttggacgaaattgctattctctgct |
335 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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| T |
1755493 |
tggcaggttggacgaaattgctattctctgct |
1755524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 12793938 - 12793831
Alignment:
| Q |
224 |
aagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattg |
323 |
Q |
| |
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|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| || |||||| |
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| T |
12793938 |
aagctccagtactctttcgatctcaagagattttccatcaacatagaccaatgatcataat-gaccatcgaatctaggtatggcaggttgaacaaaattg |
12793840 |
T |
|
| Q |
324 |
ctattctct |
332 |
Q |
| |
|
|||||||| |
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|
| T |
12793839 |
ttattctct |
12793831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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