View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606-Insertion-1 (Length: 327)
Name: NF0606-Insertion-1
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 30389836 - 30389610
Alignment:
| Q |
7 |
aagctacaatactgtaacttttgtgtctttgaagattcttaaatgtaaaagcaaatatgctataactccagttacgcacgaatcttatgtttattcgcat |
106 |
Q |
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| T |
30389836 |
aagctacaatactgtaacttttgtgtcttcgaagattcttaaatgtaaaagcaaatatgctataactccagttacccgcgaatc--atgtttattcaatt |
30389739 |
T |
|
| Q |
107 |
tcatgaaagattgtttaccgtttaataaattttgaacgaccaagtacttgtaagcttagcttaattgatatgaacgttgcata--atatatgcatgtatt |
204 |
Q |
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| T |
30389738 |
tcatgaaagattgtgtagcgcttaataaattttgaacgatcaagtctttatgagcttaacttaattgatatgcacattgtataatatatatatatgtgtt |
30389639 |
T |
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| Q |
205 |
ggaattcaaactttctagataagaagatc |
233 |
Q |
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||||||| ||||| ||||||| ||||||| |
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| T |
30389638 |
ggaattcgaacttcctagataggaagatc |
30389610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 30389609 - 30389550
Alignment:
| Q |
265 |
ttatttctatcttccacatgtaggagataaatggtgtacggtgaacatgtcaaactccaa |
324 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30389609 |
ttatttctatcttccatatgtaggagatagatggtgtacggtgaacatgtcaaactccaa |
30389550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 2279616 - 2279576
Alignment:
| Q |
158 |
aagcttagcttaattgatatgaacgttgcataatatatgca |
198 |
Q |
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| T |
2279616 |
aagcttaacttaattgatatgaacattgcataatatatgca |
2279576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 9286337 - 9286378
Alignment:
| Q |
157 |
taagcttagcttaattgatatgaacgttgcataatatatgca |
198 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
9286337 |
taagcttagcttaattgttatggatgttgcataatatatgca |
9286378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 9290404 - 9290445
Alignment:
| Q |
157 |
taagcttagcttaattgatatgaacgttgcataatatatgca |
198 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||||||| |
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|
| T |
9290404 |
taagcttagcttaattgttatggatgttgcataatatatgca |
9290445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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