View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_high_1 (Length: 742)
Name: NF0606_high_1
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 56 - 722
Target Start/End: Complemental strand, 36154913 - 36154247
Alignment:
| Q |
56 |
acaaagccctagctgttgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagttt |
155 |
Q |
| |
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||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
36154913 |
acaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagttt |
36154814 |
T |
|
| Q |
156 |
gctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgttcagttgaagccta |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36154813 |
gctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagccta |
36154714 |
T |
|
| Q |
256 |
gcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaaatgtaagaggtcgactt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
36154713 |
gcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactt |
36154614 |
T |
|
| Q |
356 |
tttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccaccggaacctgatggcga |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
36154613 |
tttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaaccctccggaacctgatggcga |
36154514 |
T |
|
| Q |
456 |
tgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatg |
555 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154513 |
tgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatg |
36154414 |
T |
|
| Q |
556 |
tcaatggtgggtccttttgggattgttatggtgggtgatggtgctccagttggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctg |
655 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154413 |
tcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagttggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctg |
36154314 |
T |
|
| Q |
656 |
ttgctgttgttgctggtaatggtggtgatgctgttgttgatggtaagggtggtgagggtgatgatgt |
722 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154313 |
ttgctgttgttgctggtaatggtggtgatgctgttgttgatggtaagggtggtgagggtgatgatgt |
36154247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 56 - 722
Target Start/End: Complemental strand, 36151527 - 36150861
Alignment:
| Q |
56 |
acaaagccctagctgttgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagttt |
155 |
Q |
| |
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||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
36151527 |
acaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagttt |
36151428 |
T |
|
| Q |
156 |
gctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgttcagttgaagccta |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36151427 |
gctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagccta |
36151328 |
T |
|
| Q |
256 |
gcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaaatgtaagaggtcgactt |
355 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
36151327 |
gcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactt |
36151228 |
T |
|
| Q |
356 |
tttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccaccggaacctgatggcga |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36151227 |
tttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaacccaccggaacctgatggcga |
36151128 |
T |
|
| Q |
456 |
tgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatg |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36151127 |
tgataccagctgcgagttgagttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggctttttgaagaatgttgattatg |
36151028 |
T |
|
| Q |
556 |
tcaatggtgggtccttttgggattgttatggtgggtgatggtgctccagttggtgttgttggaacaagcggaactgtacttaatcctggtgatggtgctg |
655 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |
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|
| T |
36151027 |
tcaatggtgggtccttttgggactgttatggtgggtgatggtgcaccagctggtgttgttggaacaagtggaactgtgcttaatcctggtgatggcgctg |
36150928 |
T |
|
| Q |
656 |
ttgctgttgttgctggtaatggtggtgatgctgttgttgatggtaagggtggtgagggtgatgatgt |
722 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
36150927 |
ttgctgttgttgctggtaatggtgttgatgctgttgttgatggtaagggtggtgatggagatgatgt |
36150861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 88 - 538
Target Start/End: Complemental strand, 5274006 - 5273544
Alignment:
| Q |
88 |
ggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtag |
187 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| | ||| ||| | ||||| ||||| ||||| |||||| |||| || ||||| || || |||||||| | |
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|
| T |
5274006 |
ggagctttagcaggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttg |
5273907 |
T |
|
| Q |
188 |
cattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgttcagttgaagcc---tagcatcatcaccggcttgtgtttgaacagg |
284 |
Q |
| |
|
|||| || | || || | ||| || || || | || ||| |||| || || || ||||| |||| | || ||||||||||||||||||||||| || |
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|
| T |
5273906 |
cattaaccgtgccagttgtcatgctgacatggctaccgccagaagtggttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgg |
5273807 |
T |
|
| Q |
285 |
gttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaaatgtaagaggtcgactttttgtctatcagtgagggagttgaggaac |
384 |
Q |
| |
|
|||||||||||| |||||||| || || || | |||||| | ||| | ||| || ||||| || || ||||| ||||| ||| ||||||| || ||||| |
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| T |
5273806 |
gttggttaaggtgtcgaagttcgagattgagatgaatgaggaaagtgtgtggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaa |
5273707 |
T |
|
| Q |
385 |
cctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccacc------ggaacctgatggcgatgat---accagctgcgagttga |
475 |
Q |
| |
|
|||| ||||||||| || || | | |||||||| ||||||| |||||| ||||| ||| |||||| |||||| || || || ||||||| |
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|
| T |
5273706 |
cctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccaccactgctagaatctgatgatgatgatgtaactagttgtgagttga |
5273607 |
T |
|
| Q |
476 |
gttgattgattaattgtgttgttttgagaagacggattagaacggagaaccttttggcttttt |
538 |
Q |
| |
|
|||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||| ||||||| |
|
|
| T |
5273606 |
gttggtttattaactgagttgttttgagaagacgaatgagaactgagaatctttttgcttttt |
5273544 |
T |
|
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