View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0606_high_10 (Length: 390)
Name: NF0606_high_10
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_high_10 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 33370079 - 33370255
Alignment:
| Q |
130 |
tttattgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgg |
229 |
Q |
| |
|
|||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33370079 |
tttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatga |
33370178 |
T |
|
| Q |
230 |
cggtcttttctcttttgatgtttactttccccctggatatctcaatgta--cccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
33370179 |
tggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccccggtatgtggttgaggatactt |
33370255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 33363752 - 33363911
Alignment:
| Q |
145 |
atacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtcttttctcttt |
244 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
33363752 |
atacaatatttgtgagaatcttcgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgatggtcttttcttttt |
33363851 |
T |
|
| Q |
245 |
tgatgtttactttccccctggatatctcaatgtacccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
33363852 |
tgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaatactt |
33363911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 292
Target Start/End: Complemental strand, 5839393 - 5839238
Alignment:
| Q |
137 |
ctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtctt |
236 |
Q |
| |
|
||||||| || ||||||||||| |||| || |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
5839393 |
ctcatcagattcaatatttgttcgagtttatgaatcaagaatggatctcatgagggctgtaattattggagcagacgggactccttaccatgacggtctt |
5839294 |
T |
|
| Q |
237 |
ttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtgg |
292 |
Q |
| |
|
|||| ||| ||| ||||||| || ||| | || ||||||||| ||||||||||| |
|
|
| T |
5839293 |
ttctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg |
5839238 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 33369981 - 33370055
Alignment:
| Q |
25 |
agatatttgttttgatgttggagttaagaacttatacacactctgtagtgtgaaa-ctgcttctgcatattgctcaacc |
102 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||| |||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
33369981 |
agatacttgttttgacgttggaatcaagaacttatagacac----tagtgtgaaacctgcttctgcaaattgctcaacc |
33370055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 135 - 304
Target Start/End: Original strand, 5893 - 6062
Alignment:
| Q |
135 |
tgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtc |
234 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5893 |
tgctcatcagatacaatatttgtgagagtctgtgaatcaagaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtc |
5992 |
T |
|
| Q |
235 |
ttttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
5993 |
ttttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactt |
6062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 135 - 304
Target Start/End: Complemental strand, 17565 - 17396
Alignment:
| Q |
135 |
tgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtc |
234 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17565 |
tgctcatcagatacaatatttgtgagagtctgtgaatcaagaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtc |
17466 |
T |
|
| Q |
235 |
ttttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
17465 |
ttttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactt |
17396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 41426407 - 41426574
Alignment:
| Q |
137 |
ctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtctt |
236 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | ||||| |
|
|
| T |
41426407 |
ctcatcagatacaatatttgtgagagtctgtgaatcaaggatggatctcatgagggctgtgattattggagcaaaagggactccttaccatgacagtctt |
41426506 |
T |
|
| Q |
237 |
ttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
41426507 |
ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactt |
41426574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 41431793 - 41431967
Alignment:
| Q |
130 |
tttattgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgg |
229 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41431793 |
tttaatgctcatcagatacaatatttgtgagagtcttcgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatga |
41431892 |
T |
|
| Q |
230 |
cggtcttttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
41431893 |
tggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgatgatactt |
41431967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 41448717 - 41448888
Alignment:
| Q |
2 |
ttatctttggttctattatgtccagatatttgttttgatgttggagttaagaacttatacacactctgtagtgtgaaactgcttctgcatattgctcaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41448717 |
ttatctttggttctattatgtccagatatttgttttgatgttggagttaagaacttatacacactatgtagtgtgaaactgcttctgcatattgctcaac |
41448816 |
T |
|
| Q |
102 |
cagccggccatttctttga---nnnnnnnnatttattgctcatcaaatacaatatttgttagagtctacgaa |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
41448817 |
cagccggccatttctttgatatttttatttatttattgctcatcagatacaatatttgtcggagtctacgaa |
41448888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 41442400 - 41442574
Alignment:
| Q |
130 |
tttattgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgg |
229 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41442400 |
tttaatgctcatcaaatacaatatttgtgagagtctgcgaatcaaggatggatctcttgagagctgtgattattggagcagaagggactccttaccatga |
41442499 |
T |
|
| Q |
230 |
cggtcttttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtggttgaggatactt |
304 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||| |||| |||||||||||||||| |||||| || |||||| |
|
|
| T |
41442500 |
cggtcttttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggttaagaatactt |
41442574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 41448905 - 41449092
Alignment:
| Q |
204 |
ggagcagaagggactccttaccatggcggtcttttctcttttgatgtttactttccccc-tggatatctcaatgtacccccggtatgtggttgaggatac |
302 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
41448905 |
ggagcagaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgaggatac |
41449004 |
T |
|
| Q |
303 |
ttcatannnnnnnggaacaacaaactaatatannnnnnnggaacctatatattagataaaataggaaaagtacaaataatacttgaca |
390 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41449005 |
ttcatatttttttggaacaacaaactaatatattttttgggaacctatatattagataaaataggaaaagtacaaataatacttgaca |
41449092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 41453658 - 41453766
Alignment:
| Q |
130 |
tttattgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgg |
229 |
Q |
| |
|
|||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41453658 |
tttaatgctcatcagatacaatatttgtgagagtctatgaatcaaggatggatctcttgagggctgtgattattggagcagaagagactccttaccatga |
41453757 |
T |
|
| Q |
230 |
cggtctttt |
238 |
Q |
| |
|
||||||||| |
|
|
| T |
41453758 |
cggtctttt |
41453766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 52472991 - 52473046
Alignment:
| Q |
168 |
gaatcaaggatggatctcatgagagctgtgattattggagcagaagggactcctta |
223 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
52472991 |
gaatcaaggatggatctcttgagggctgtaattattggagcagatggaactcctta |
52473046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 130 - 296
Target Start/End: Complemental strand, 7763109 - 7762943
Alignment:
| Q |
130 |
tttattgctcatcaaatacaatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgg |
229 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7763109 |
tttaatgctcatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcacaagggactccttaccatga |
7763010 |
T |
|
| Q |
230 |
cggtcttttctcttttgatgtttactttccccctggatatctcaatgtacccccggtatgtggttga |
296 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||| ||||| | ||| |||||||||| |||||||| |
|
|
| T |
7763009 |
tggtcttttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttga |
7762943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 289
Target Start/End: Complemental strand, 21223960 - 21223819
Alignment:
| Q |
148 |
caatatttgttagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtcttttctcttttga |
247 |
Q |
| |
|
|||||||||| ||||| || |||||||| || ||||| |||| |||||||||||||||||||| || || ||||| |||| || || |||| |||||| |
|
|
| T |
21223960 |
caatatttgtcagagtttatgaatcaagaatagatctgttgagggctgtgattattggagcagagggaaccccttatcatgatggcctattcttttttga |
21223861 |
T |
|
| Q |
248 |
tgtttactttccccctggatatctcaatgtacccccggtatg |
289 |
Q |
| |
|
| ||| ||||||| ||| | || ||||||||| |||||||| |
|
|
| T |
21223860 |
ttttttctttcccagtggctttcccaatgtacctccggtatg |
21223819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 1004661 - 1004793
Alignment:
| Q |
169 |
aatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatggcggtcttttctcttttgatgtttactttccccctggata |
268 |
Q |
| |
|
|||||| |||| |||| |||| ||||| ||||||||| || |||||||||||||||| ||||||||||| ||||||| ||||||| || | || |
|
|
| T |
1004661 |
aatcaaagatgaatctgttgagggctgtaattattggaccaaaagggactccttaccagcacggtcttttcttttttgatttttacttccctagtaacta |
1004760 |
T |
|
| Q |
269 |
tctcaatgtacccccggtatgtggttgaggata |
301 |
Q |
| |
|
|| || |||||||||||||||| |||||||||| |
|
|
| T |
1004761 |
tcccattgtacccccggtatgtcgttgaggata |
1004793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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