View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_high_2 (Length: 666)
Name: NF0606_high_2
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 11 - 634
Target Start/End: Original strand, 41073722 - 41074342
Alignment:
| Q |
11 |
cagagatccgaataatgtttgactttaaaataatactaatgtttatttacactattcctgtgtctctagttttttcaatgatcgtcttgatttacatgga |
110 |
Q |
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| T |
41073722 |
cagaaatccgaataatgtttgactttaaaataatactaatgtttatttacactattcctgtgtctctagttttttcaatgatcgtcttgatttacatgga |
41073821 |
T |
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| Q |
111 |
attgtgtcatttagcggaagtgccacctccgccagtcaatgaggtagaggtgcctccggtctgaagccagccgaagaaagaagaagacaccattcaggta |
210 |
Q |
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| T |
41073822 |
attgtgtcatttagcggaagtgccacctccgccagtcaatgaggtagaggtgcctccggtctgaagccagccgaagaaagaagaagacaccattcaggta |
41073921 |
T |
|
| Q |
211 |
gctaataatttttagaattcactgtaattatacgtgttggtgccagacac-atacatgtccaacaccggacacgcctaatctaagaagcttccgtacttc |
309 |
Q |
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| T |
41073922 |
gcaaataatttttagaattcact-----tatacgtgttggtgtcagacatgatacatatccaacaccggacacgtctaatctaagaagcgtccgtacttc |
41074016 |
T |
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| Q |
310 |
atagatca---tcatccttctcaaatcattacttgtgtcctaggtcataggcttagaagttttaagtcatggcttgcttaagagtgaaataagtagatta |
406 |
Q |
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| T |
41074017 |
atagatcatcatcatccttctcaaatcattacttgtgtcctaggtcatacgcttagaagttttaagtcatggcttgcttaagagtgaaataagtagatta |
41074116 |
T |
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| Q |
407 |
gtgagagatttaattttttcaatcataaatattcatcactaatttttccttttccattggtgacattgagagttgtaatgtcccgatatttgataggaag |
506 |
Q |
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| T |
41074117 |
gtgagagatttaattttttcaatcataaatattcatcactaatttttccttttccattggtgacattgagagttgtaatgtcccgatatttgataggaag |
41074216 |
T |
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| Q |
507 |
agtgatattgagtgtgatgtcatcaaattcatttattttctcacattattttacttgtgtcgacatgtcgttttttagtggcgttttttggtgtacatgt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41074217 |
agtgatattgagtgtgatgtcatcaaattcatttattttctcacattattttacttgtgtcgacatgtcgttttttagtggcgttttttggtgt--atgt |
41074314 |
T |
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| Q |
607 |
ttgtgtccctaggtcatatgtttaaaag |
634 |
Q |
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| T |
41074315 |
ttgtgtccctaggtcatatgtttaaaag |
41074342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 41074387 - 41074429
Alignment:
| Q |
384 |
ttaagagtgaaataagtagattagtgagagatttaattttttc |
426 |
Q |
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| T |
41074387 |
ttaagagtgaaataagtagaattgtgagagatttaattttttc |
41074429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 41085657 - 41085770
Alignment:
| Q |
42 |
aatactaatgtttatttacactattcctgtgtctctagttttttcaatgatcgtcttgatttacatggaattgtgtcatttagcggaagtgccacctccg |
141 |
Q |
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| T |
41085657 |
aatactattgtatattttcactattcccgtgactttaatatttttactgatcttcttcatttgtaaggaatggtgtcatttagcggaagtgatacctccg |
41085756 |
T |
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| Q |
142 |
ccagtcaatgaggt |
155 |
Q |
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|| |||||| |||| |
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| T |
41085757 |
ccggtcaatcaggt |
41085770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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