View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_high_20 (Length: 215)
Name: NF0606_high_20
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 4269893 - 4269730
Alignment:
| Q |
30 |
catcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaacac |
129 |
Q |
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| T |
4269893 |
catcattcctcgagggaaggtaatagtaatgcggattggttagcgaaatacatagcaagattggaaggtgattcgattgcttggaggtaatgtccaactc |
4269794 |
T |
|
| Q |
130 |
ctctttcgactactcttattgctgattcaatggagacaacttttctatgagtttaagatgtgtt |
193 |
Q |
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| T |
4269793 |
ctctttcgactactcttattgctgactcaatggagacaacttttctatgagtttaagatgtgtt |
4269730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 1583144 - 1583286
Alignment:
| Q |
30 |
catcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaacac |
129 |
Q |
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| T |
1583144 |
catcattccttgagggaaggtaataactatgcggattggttagcaaaatacagagcaagattggagggtgaatcgatcgtttggagacaatgtctaactc |
1583243 |
T |
|
| Q |
130 |
ctctttcgactactcttattgctgattcaatggagacaacttt |
172 |
Q |
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| T |
1583244 |
ctctttcggctactcttattgctgactccatggggacaacttt |
1583286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 22081572 - 22081417
Alignment:
| Q |
30 |
catcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaacac |
129 |
Q |
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| T |
22081572 |
catcattcgttgagggaaggtaatatctgtgcagattagttagcgaaatacatagcaagattagaggatgactcaatcgcttggaggcaatgttaaactt |
22081473 |
T |
|
| Q |
130 |
ctctttcgactactcttattgctgattcaatggagacaacttttctatgagtttaa |
185 |
Q |
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|||||||||||||||||| |||||| || |||||||||||||| || ||||||||| |
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|
| T |
22081472 |
ctctttcgactactcttagtgctgactccatggagacaactttcctctgagtttaa |
22081417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 19224453 - 19224575
Alignment:
| Q |
30 |
catcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaacac |
129 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||| | |||||| ||| ||||||||| ||||||||||| |||||||| |||||||||| | |
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| T |
19224453 |
catcattccttgagggaaggtaatagttgtgcggattaattaacaaaatatggagtaagattggagggtgactcgatcgcttggagacaatgtccaactc |
19224552 |
T |
|
| Q |
130 |
ctctttcgactactcttattgct |
152 |
Q |
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||||||||||||||||||||||| |
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| T |
19224553 |
ctctttcgactactcttattgct |
19224575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 1963093 - 1962977
Alignment:
| Q |
30 |
catcattcctcgagggaaggtaatagtagtgcggattggttagcgaaatatagagcaagattggaaggtgactcgattgcttggaggtaatgtccaacac |
129 |
Q |
| |
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|||||||||| |||||||| |||||| ||||| || ||||||| ||| | |||||||||||| |||||| | ||||||||||| ||||| |||||| |
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| T |
1963093 |
catcattccttgagggaagttaatagatgtgcgaatcaattagcgatatacaaagcaagattggagggtgacgcaattgcttggagtcaatgttcaacac |
1962994 |
T |
|
| Q |
130 |
ctctttcgactactctt |
146 |
Q |
| |
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|| |||||||||||||| |
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|
| T |
1962993 |
ctttttcgactactctt |
1962977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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