View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_high_6 (Length: 474)
Name: NF0606_high_6
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 40407911 - 40408129
Alignment:
| Q |
7 |
atatgtaggcaaatcattagatgatctttgccctggagatattgatgatgaagaactactacttgtggcatgtttgaagtaatcatcagaaaatttgttc |
106 |
Q |
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| T |
40407911 |
atatgtaggcaaatcattagatgatctttgccctggagatattgatgatgaagaactactacttgtggcatgtttgaagtaatcatcagaaaatttgttc |
40408010 |
T |
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| Q |
107 |
cagcttgcagacctatacatcattgtttggtttcttaatttataatctttgtactataaataaaatctatattatgttaatttggaagagaaaaaagtaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40408011 |
cagcttgcagacctatacatcattgtttggtttcttaatttataacctttgtactataaataaaatctatattatgttaatttggaagagaaaaaagtaa |
40408110 |
T |
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| Q |
207 |
ttagagcatgagcataaaa |
225 |
Q |
| |
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||||||||||||||||||| |
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| T |
40408111 |
ttagagcatgagcataaaa |
40408129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 266 - 467
Target Start/End: Original strand, 40408170 - 40408372
Alignment:
| Q |
266 |
gaatagaaaaaagtcttcacgaaaatgaggcctatttctttgagttcggcaatctttgctctccaatttccactcaacatcctcttaccaattcaattat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40408170 |
gaatagaaaaaagtcttcacgaaaatgaggcctatttctttgagttcggcaatctttgctctccaatttccactcaacatcctcttaccaattcaattat |
40408269 |
T |
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| Q |
366 |
caacatttcttgtgacttcatnnnnnnntaatgtgaaattgtcaatggtaatataattac-nnnnnnnngagtatatacttctttaaatgatacttcatc |
464 |
Q |
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|||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
40408270 |
caacatttcttgcgactttatacaaaaataatgtgaaattgtcaatggtaatataattacaaaaaaaaagagtatatacttctttaaatgatactccatc |
40408369 |
T |
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| Q |
465 |
tca |
467 |
Q |
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||| |
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| T |
40408370 |
tca |
40408372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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