View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_10 (Length: 440)
Name: NF0606_low_10
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_10 |
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| [»] scaffold0522 (2 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 2665208 - 2665641
Alignment:
| Q |
1 |
tgagcctccggttattccaacattccccccattggatgtagctgctccttcttactcatcattgccactgcgccccgcttacatctctagaagattgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2665208 |
tgagcctccggttattccaacattccccccattggatgtagctgctccttcttactcatcattgccactgcgccccacttacatctctagaagattgatg |
2665307 |
T |
|
| Q |
101 |
gctgttcacttttaagtctcttgcaattgagcctatgttcgttcattaagaaaataatttaaaaattttcgagattatatagatttgttgccttttagtg |
200 |
Q |
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| T |
2665308 |
gctgttcacttttaagtctcttgcaattgagcctatgttcgttcattaagaaaataatttaaaaaatttcgagattatatagatttgttgccttttagtg |
2665407 |
T |
|
| Q |
201 |
tttagggcttgattttcactttaatgtgaaaatatggtgttgaaagcttgaaaatgtaaacnnnnnnnnnntcttgaattatatgagtagtaattaaaga |
300 |
Q |
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| T |
2665408 |
tttagggcttgattttcactttaatgtgaaaatatggtgttgaaagcttgaaaatgtaaac-aaaaaaaaatcttgaattatatgagtagtaattaaaga |
2665506 |
T |
|
| Q |
301 |
gtgacattatatgtaattgatggttattgtaagagttcaa----aaataaataaataaatgatatttatcgtttttgtttaattttcttaatgatgtatt |
396 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2665507 |
gtgacattatgtgtaattgatggttattgtaagagttcaaaaataaataaataaataaatgatatttatcgtttttgtttaattttcttaatgatgtatt |
2665606 |
T |
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| Q |
397 |
ctttattgcgtgaataacatgtctgttagtattat |
431 |
Q |
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| T |
2665607 |
ctttattgcgtgaataatatgtctgttagtattat |
2665641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 578 - 420
Alignment:
| Q |
86 |
tctagaagattgatggctgttcacttttaagtctcttgcaattgagcctatgttcgttcattaagaaaa---taatttaaaaattttcgagattatatag |
182 |
Q |
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||||||||| ||||| | |||||| ||||| |||||||| | || |||| || |||| | ||||||| ||||| ||||| ||||||| |||||||| |
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| T |
578 |
tctagaagactgatgaattttcactattaagcctcttgcattagaacctaagtgtgttcttcaagaaaataataattaaaaaaatttcgagtttatatag |
479 |
T |
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| Q |
183 |
atttgttgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttg |
242 |
Q |
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| T |
478 |
a-tcgttgcaatttagtgtttaggtcttgattttcactttcatgtgaaaatatcgtgttg |
420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 361 - 280
Alignment:
| Q |
294 |
ttaaagagtgacattatatgtaattgatggttattgtaagagttcaaaaataaataaataaatgatatttatcgtttttgtttaa |
378 |
Q |
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||||||||||||||||| ||||| | |||||| ||||||||||| || | || ||||||| |||||||||||||||| |||| |
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| T |
361 |
ttaaagagtgacattatgtgtaactcatggttcttgtaagagtttaatatta---taataaataatatttatcgtttttgcttaa |
280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 21472191 - 21472287
Alignment:
| Q |
148 |
aagaaaataat--ttaaaaat-tttcgagattatatagatttgttgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttg |
242 |
Q |
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||||||||||| |||||||| ||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
21472191 |
aagaaaataataattaaaaatatttcgagtttatatagatc-gttgcaatttagtgtttaggtcttgattttcactttcgtgtgaaaatatggtgttg |
21472287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 4516 - 4604
Alignment:
| Q |
153 |
aataatttaaaaattttcgagattatatagatttgttgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttg |
242 |
Q |
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||||||| ||||| ||||||| |||||||||| ||||| ||||||||||||| |||||| |||||||| |||||||||||||||||| |
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| T |
4516 |
aataattaaaaaaatttcgagtttatatagatc-gttgcaatttagtgtttaggtcttgatattcactttcgtgtgaaaatatggtgttg |
4604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 19262204 - 19262042
Alignment:
| Q |
84 |
tctctagaagattgatggctgttcacttttaagtctcttgcaattgagcctatgttcgttcattaagaaaataat---ttaaaaattttcgagattatat |
180 |
Q |
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|||||||||||||||||||| |||| | ||||| || ||||| || ||||| | | || ||||||||||||| ||||||| |||| || |||| | |
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| T |
19262204 |
tctctagaagattgatggcttttcagtcttaagccttttgcattttggcctaaatgcactcgttaagaaaataatgatttaaaaaatttcaagtttatgt |
19262105 |
T |
|
| Q |
181 |
agatttgttgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttgaa |
244 |
Q |
| |
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|||||| || ||||||| |||||||| | |||| |||||||| ||||||||||||| |||||| |
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| T |
19262104 |
agatttctt-ccttttaatgtttaggtcctgatattcactttcgtgtgaaaatatggggttgaa |
19262042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 19261975 - 19261895
Alignment:
| Q |
297 |
aagagtgacattatatgtaattgatggttattgtaagagttcaaaaataaataaataaatgatatttatcgtttttgtttaattt |
381 |
Q |
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|||||||||||||| |||||||||||||| || | |||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
19261975 |
aagagtgacattatgtgtaattgatggttcgtgaatgagttcaa----tattaaataaatgatatttgtcgtttttgtttaattt |
19261895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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