View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_12 (Length: 411)
Name: NF0606_low_12
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 30968631 - 30968331
Alignment:
| Q |
13 |
aatatcacatcattatttttctctttgtttcaagtcgtaagtgtatatacacgcaatattttagtaattaaatattttatatgataagactgaaaagctt |
112 |
Q |
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| T |
30968631 |
aatatcacatcattatttttctct--gtttcaagtcgtaagtgtatatacacgcaatattttagtaattaaatattttatatgataagactgaaaagctt |
30968534 |
T |
|
| Q |
113 |
aaatttgtttacttttattnnnnnnntgagacactctgtggtttaaatttacggttgattctactatatcttctactagttctctaatattatgcatggg |
212 |
Q |
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| T |
30968533 |
aaatttgtttacttttattaaaaaaatgagacactctgtggtttaaatttacggttgattctactatatcttctactagttctctaatattatgcatggg |
30968434 |
T |
|
| Q |
213 |
aatatgaacgtacagttcgatgcagctttgatgttgtgatgtttatttannnnnnnatttgtaacaactaacaagttatgcaatgaagaagaagaagaaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30968433 |
aatatgaacgtacagttcgatgcagctttgatgttgtgatgtttatttatttttttatttgtaacaactaacaagttatgcaatgaagaagaagatgaaa |
30968334 |
T |
|
| Q |
313 |
ctg |
315 |
Q |
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||| |
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| T |
30968333 |
ctg |
30968331 |
T |
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