View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0606_low_13 (Length: 395)
Name: NF0606_low_13
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 129 - 363
Target Start/End: Original strand, 14592241 - 14592475
Alignment:
| Q |
129 |
ttttgttttactgttaatagacaaggtcgtagtggcgatcttgctttattttgaaaatctacacagttaattgttcaatcccaaacaactctactctaat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14592241 |
ttttgttttactgttaatagacaaggtcgtagtggcgatcttgctttattttgaaaatctacacagttaattgttcaatcccaaacaactctactctaat |
14592340 |
T |
|
| Q |
229 |
aatcatatagatgctaaagtggtgaatattaacaacggaaattgctgtctaacgggttattccgttttttcagaaaatagaagaagaaagaatatttgac |
328 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
14592341 |
aatcatatagatgttaaagtggtgaatattaacaagggaaattgctgtctaacggattattccattttttcaaaaaatagaagaagaaagaatgtttgac |
14592440 |
T |
|
| Q |
329 |
aatttttacgacaaccgtcaaatatttctaatacc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14592441 |
aatttttacgacaaccgtcaaatatttctaatacc |
14592475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 14591792 - 14591877
Alignment:
| Q |
2 |
catttcctagtttgaagtaccttgagggagaagatccactccactggaaatttcctccgggttttctcttgtgaaataatcttagcc |
88 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
14591792 |
catttcctagtttgaagtacctcgagggagaggatccactccagtggaaatttcctcc-tgttttctcctgtgaaataatcttagcc |
14591877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 14591941 - 14591981
Alignment:
| Q |
91 |
caagttcattcatttcttttcttcccttcgtcacgttgttt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14591941 |
caagttcattcatttcttttcttcccttcctcacgttgttt |
14591981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 19828723 - 19828768
Alignment:
| Q |
91 |
caagttcattcatttcttttcttcccttcgtcacgttgttttgttt |
136 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||| |||| |
|
|
| T |
19828723 |
caagttcattcatttctttccttctcttcctcacgttgtttcgttt |
19828768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 352
Target Start/End: Original strand, 22906277 - 22906491
Alignment:
| Q |
131 |
ttgttttactgttaatagacaaggtcgtagtggcgatcttgctttattttgaaaatctacacagttaattgttcaatcccaaacaactctactctaataa |
230 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||| |||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| |
|
|
| T |
22906277 |
ttgttttactgttaaccgacaaggtcgtagtggaggtcttgtgttattttggaaatctaca--gttaattgttccattacaaac-----tactcaaataa |
22906369 |
T |
|
| Q |
231 |
tcatatagatgctaaagtggtgaatattaacaacggaaattgctgtctaacgggttattccgttttttcagaaaatagaagaagaaagaatatttgacaa |
330 |
Q |
| |
|
||||||||||||| |||||||| |||| | || ||||| || || |||| ||||||| | |||| |||||||||| ||||| || || ||| ||| |
|
|
| T |
22906370 |
tcatatagatgctcaagtggtggatatgagtaaaggaaaatggcgtttaactggttattatggttttccagaaaatagtagaaggaaagatgcttggcaa |
22906469 |
T |
|
| Q |
331 |
tttttacgacaaccgtcaaata |
352 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
22906470 |
tttttacgacaactgtcaaata |
22906491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 40396940 - 40396880
Alignment:
| Q |
27 |
gggagaagatccactccactggaaatttcctccgggttttctcttgtgaaataatcttagcc |
88 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||| | ||||||| |||||||||||||||||| |
|
|
| T |
40396940 |
gggagaggatccactccagtggaaattttctcctg-ttttctcctgtgaaataatcttagcc |
40396880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 50232665 - 50232625
Alignment:
| Q |
91 |
caagttcattcatttcttttcttcccttcgtcacgttgttt |
131 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
50232665 |
caagttgattcatttcttttcttcccttcctcacgttgttt |
50232625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 50052889 - 50052929
Alignment:
| Q |
91 |
caagttcattcatttcttttcttcccttcgtcacgttgttt |
131 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
50052889 |
caagttcattcatttcttttctttccttcctcacattgttt |
50052929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 226 times since January 2019
Visitors: 3833