View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0606_low_16 (Length: 383)

Name: NF0606_low_16
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0606_low_16
NF0606_low_16
[»] chr1 (4 HSPs)
chr1 (1-228)||(50715621-50715849)
chr1 (301-372)||(50715852-50715923)
chr1 (65-166)||(1456657-1456758)
chr1 (1-207)||(8239873-8240079)
[»] chr2 (2 HSPs)
chr2 (1-206)||(6839933-6840139)
chr2 (301-359)||(6839768-6839826)
[»] chr7 (3 HSPs)
chr7 (124-361)||(29456309-29456546)
chr7 (1-207)||(7316999-7317207)
chr7 (1-89)||(18260997-18261084)
[»] chr4 (1 HSPs)
chr4 (47-207)||(31928529-31928690)
[»] chr5 (3 HSPs)
chr5 (41-207)||(26730705-26730869)
chr5 (7-167)||(39790072-39790235)
chr5 (102-203)||(10715466-10715566)
[»] chr3 (4 HSPs)
chr3 (1-92)||(579795-579885)
chr3 (1-59)||(43191235-43191292)
chr3 (1-89)||(3422908-3422995)
chr3 (301-357)||(55139615-55139671)
[»] chr8 (1 HSPs)
chr8 (1-92)||(1946067-1946158)
[»] chr6 (1 HSPs)
chr6 (1-92)||(1161798-1161889)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 50715621 - 50715849
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaaccacaacaacaaagaaacaagagttagctcatac 100  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50715621 ttttggtaaaaagagataacttccattaaccataaacaactattacaaactacatggaaacaagaaccacaacaacaaagaaacaagagttagctcgtac 50715720  T
Q  101 aaaaacaagaaataggccacgacctcacaatc--ttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggt 198  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  50715721 aaaaacaagaaataggccacgacctcacaatcttttaacattaggttctttatctgattaattttcaaacctc-aacatatacaatctctttgatttggt 50715819  T
Q  199 gaaggagcttgatgatgtttctgaaatatt 228  Q
    ||||||||||||||||||||| ||||||||    
T  50715820 gaaggagcttgatgatgtttcggaaatatt 50715849  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 50715852 - 50715923
Alignment:
Q  301 tgttcatgttgcattaactttgaatacattgcatcacaccctgtcaaatactagtattaattattagttcat 372  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50715852 tgttcatgttgcattgactttgaatacattgcatcacaccctgtcaaatactagtattaattattagttcat 50715923  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 1456758 - 1456657
Alignment:
Q  65 aaccacaacaacaaagaaacaagagttag-ctcatacaaaaacaagaaataggccacgacctcacaatcttaacattaggttctttatctgattaatttt 163  Q
    ||||||||||||| ||||||||||||||| ||| |||||   ||||||| ||| ||| ||||||||||||||||| |||| || | ||||||||| ||||    
T  1456758 aaccacaacaacatagaaacaagagttaggctcgtacaagtccaagaaa-aggtcacaacctcacaatcttaacactaggctcatcatctgattactttt 1456660  T
Q  164 caa 166  Q
    |||    
T  1456659 caa 1456657  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8239873 - 8240079
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaaccacaac--aacaaagaaacaagagtta-gctca 97  Q
    |||| ||||| | ||||||||| ||||||||| |||||   ||||||||||| |||| | ||||||||| ||   || |||||||||||||||| ||| |    
T  8239873 tttttgtaaataaagataactttcattaatca-aaacagtcattacaaactaaatggcatcaagaaccataaactaataaagaaacaagagttaagctta 8239971  T
Q  98 tacaaaaacaagaaataggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttgg 197  Q
     |||||| ||||||| || | || |||||||||||||||||||||| | || || ||  || |||| ||||||||||  |||  |||||  |||||||||    
T  8239972 aacaaaa-caagaaaaagtc-acaacctcacaatcttaacattaggctgttcatatgtgtagtttttaaacctctaatgtattcaatcttcttgatttgg 8240069  T
Q  198 tgaaggagct 207  Q
    | ||||||||    
T  8240070 ttaaggagct 8240079  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6840139 - 6839933
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatc-ataaacaactattacaaactacatggaaacaagaaccacaacaacaaag-aaacaagagtta-gctca 97  Q
    |||| ||||| ||||||||||| || ||| | | |||||  ||||||||||||||||| ||||| |||||||||||||||| ||||||||| || ||||     
T  6840139 ttttggtaaatagagataactttcaataaaccaaaaacagttattacaaactacatggcaacaacaaccacaacaacaaaggaaacaagagctaagctcg 6840040  T
Q  98 tacaaaaacaagaaataggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttgg 197  Q
    |||||   |||||||  |||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  6840039 tacaagcgcaagaaa--ggccacaacctcacaatcttaacactaggttcttcatctgattagttttcaaacctctaatgtagacgatctctttgatttgg 6839942  T
Q  198 tgaaggagc 206  Q
     ||||||||    
T  6839941 cgaaggagc 6839933  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 6839826 - 6839768
Alignment:
Q  301 tgttcatgttgcattaactttgaatacattgcatcacaccctgtcaaatactagtatta 359  Q
    ||||| ||||||||| ||||| |||| ||||||||||| |||| ||| |||||||||||    
T  6839826 tgttcttgttgcattgactttcaatatattgcatcacatcctgccaattactagtatta 6839768  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 361
Target Start/End: Original strand, 29456309 - 29456546
Alignment:
Q  124 ctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagctt--gatgatgtttctg 221  Q
    |||||||||||||||||||| |||| | | ||||||||||||| ||||||   |||| || |||||| ||||||||||||||||   ||||||| || ||    
T  29456309 ctcacaatcttaacattaggctcttcagcggattaattttcaaccctctattgtatacaacctctttcatttggtgaaggagctcccgatgatgattatg 29456408  T
Q  222 aaatattccggcattcatttctttccaaatcatatgttcagttagattcactatcgttctactcagtt-atgcatataaatgttcatgttgcattaactt 320  Q
    |||||||  | ||||| |||||||||||||   || ||  |||| | |||||||| |||||||||||| |||||||| | || || ||||||||| ||||    
T  29456409 aaatattatgtcattcctttctttccaaat---atattgtgttacactcactatcattctactcagttgatgcatatcattgctcttgttgcattgactt 29456505  T
Q  321 tgaatacattgcatcacaccctgtcaaatactagtattaat 361  Q
    |||||| ||||||||||| | || ||| |||||||||||||    
T  29456506 tgaatatattgcatcacatcttgccaattactagtattaat 29456546  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7316999 - 7317207
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatc-ataaacaactattacaaactacatggaaacaagaaccacaacaacaaag-aaacaagagtta-gctca 97  Q
    |||| ||||| ||||||||||| |||||| | | ||| |  ||||||||||||||||| | |||||||||| ||||||||| |||||||||  | ||||     
T  7316999 ttttggtaaatagagataactttcattaaaccaaaaatagttattacaaactacatggtagcaagaaccaccacaacaaaggaaacaagagcgaagctcg 7317098  T
Q  98 tacaaaaacaagaaataggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttgg 197  Q
    |||||   ||||||| ||||||  || |||||||||||||| ||||||||| ||||||||| |||||||||||||||  || | ||||||||||||||||    
T  7317099 tacaagcccaagaaa-aggccataacttcacaatcttaacactaggttcttcatctgattagttttcaaacctctaatgtagacaatctctttgatttgg 7317197  T
Q  198 tgaaggagct 207  Q
    ||||||||||    
T  7317198 tgaaggagct 7317207  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 18260997 - 18261084
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaaccacaacaacaaagaaacaagag 89  Q
    |||| ||||| ||||||||||| |||||| || |||||  ||||||||||||||||||| || ||| ||| | ||| ||||||||||||    
T  18260997 ttttggtaaatagagataactttcattaacca-aaacagatattacaaactacatggaatcaggaaacactaaaaccaagaaacaagag 18261084  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 31928529 - 31928690
Alignment:
Q  47 aaactacatggaaacaagaaccacaacaacaaag-aaacaagagtta-gctcatacaaaaacaagaaataggccacgacctcacaatcttaacattaggt 144  Q
    ||||||||||  |||||||||||||||||||||| ||||||||| || |||| |||||    |||||| ||||||| |||||||||| |||||| |||||    
T  31928529 aaactacatgacaacaagaaccacaacaacaaaggaaacaagagctaagctcgtacaagcctaagaaa-aggccacaacctcacaatattaacactaggt 31928627  T
Q  145 tctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagct 207  Q
    |||| || |||||| |||||| ||||||||  || | |||||||||||||||| |||||||||    
T  31928628 tcttcatttgattagttttcatacctctaatgtacacaatctctttgatttggcgaaggagct 31928690  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 26730705 - 26730869
Alignment:
Q  41 tattacaaactacatggaaacaagaaccacaacaacaaagaaacaag-agttagctcatacaaaaacaagaaataggccacgacctcacaatcttaacat 139  Q
    |||||||||||| |||  ||||||||| || ||| |||||||| ||| | | ||||| |||||||  |||||| |||| || ||||||||||||||||||    
T  26730705 tattacaaactatatgacaacaagaac-acgacatcaaagaaataaggactaagctcgtacaaaactaagaaa-aggctac-acctcacaatcttaacat 26730801  T
Q  140 taggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagct 207  Q
    |||  |||| ||||||||| ||||||||||| |||   ||| |||||||| ||||||||| |||||||    
T  26730802 tagactcttcatctgattagttttcaaacctataatgcatacaatctcttagatttggtggaggagct 26730869  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 39790072 - 39790235
Alignment:
Q  7 taaaaagagataacttccattaatc-ataaacaactattacaaactacatggaaacaagaaccac-aacaacaaa-gaaacaagag-ttagctcatacaa 102  Q
    |||| ||||||||||| |||||| | | |||||| ||||||||||||||||  |||||||||||| ||||||||| |||||||| | | ||||| |||||    
T  39790072 taaatagagataactttcattaaaccaaaaacaattattacaaactacatgacaacaagaaccacaaacaacaaaggaaacaagggctaagctcgtacaa 39790171  T
Q  103 aaac-aagaaataggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaa 167  Q
    |  | |||||  ||||||| |||||||||||| |||| ||||||||| ||||| ||| ||||||||    
T  39790172 agcctaagaa--aggccacaacctcacaatctaaacactaggttcttcatctggttagttttcaaa 39790235  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 10715566 - 10715466
Alignment:
Q  102 aaaacaagaaataggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaa 201  Q
    |||||||||| ||| |||| |||||||||||||   |||||| |||| || || ||| |||||||||||||||  || ||||||||||||||||||| ||    
T  10715566 aaaacaagaa-tagcccacaacctcacaatcttggtattaggctcttcatttgtttagttttcaaacctctaatgtaaataatctctttgatttggttaa 10715468  T
Q  202 gg 203  Q
    ||    
T  10715467 gg 10715466  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 579885 - 579795
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaaccacaacaacaaagaaacaagagtta 92  Q
    |||| ||||| ||||||||||| |||||| || |||||| ||||||||||||||||  |||| ||| |  |||||||||||||||| |||||    
T  579885 ttttggtaaatagagataactttcattaacca-aaacaattattacaaactacatgacaacacgaagcctaacaacaaagaaacaatagtta 579795  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43191235 - 43191292
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaa 59  Q
    |||| ||||| ||||||||||| |||||| || |||||| |||||||||||||||||||    
T  43191235 ttttggtaaatagagataactttcattaacca-aaacaattattacaaactacatggaa 43191292  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3422908 - 3422995
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaaccacaacaacaaagaaacaagag 89  Q
    |||| ||||| ||||||||||| |||||| || |||||  ||||||||||||||||||| || |||  || | ||| ||||||||||||    
T  3422908 ttttggtaaatagagataactttcattaacca-aaacagttattacaaactacatggaatcaggaaagactaaaaccaagaaacaagag 3422995  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 55139615 - 55139671
Alignment:
Q  301 tgttcatgttgcattaactttgaatacattgcatcacaccctgtcaaatactagtat 357  Q
    ||||||||||||| | ||||| |||| |||| ||||||| ||||||| |||||||||    
T  55139615 tgttcatgttgcactgactttaaatatattgaatcacacactgtcaattactagtat 55139671  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1946067 - 1946158
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaa-ccacaacaacaaagaaacaagagtta 92  Q
    |||| ||||| || |||||||| |||||| || |||||| ||||||||||||||||| |||||||| ||||||  |||||||| ||| |||||    
T  1946067 ttttggtaaagagcgataactttcattaacca-aaacaattattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagtta 1946158  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1161889 - 1161798
Alignment:
Q  1 ttttagtaaaaagagataacttccattaatcataaacaactattacaaactacatggaaacaagaa-ccacaacaacaaagaaacaagagtta 92  Q
    |||| ||||| ||||||||||| |||||| || |||||  ||||||||||||||||| |||||||| ||||||  |||||||| ||| |||||    
T  1161889 ttttggtaaatagagataactttcattaacca-aaacagttattacaaactacatggcaacaagaagccacaaagacaaagaagcaaaagtta 1161798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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