View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_17 (Length: 358)
Name: NF0606_low_17
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 27225929 - 27225780
Alignment:
| Q |
134 |
acagccatgtaatttgggatcaatacaattagaaaggggtgaatcatttgtggtgctttatggattttatcaattgtttgtagccgattaatgaatttaa |
233 |
Q |
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| T |
27225929 |
acagccatgtaatttgggatcaatacaattagaaagggttgaatcatttgtggtgctttatggattttatcaattgtttgtagccaattaatgcatttaa |
27225830 |
T |
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| Q |
234 |
ttgaattttatgattttaaatgattgttgatgggttgtttactgattcat |
283 |
Q |
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| T |
27225829 |
ttgaattttatgattttacatgattgttgatgggttgtttactgattcat |
27225780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 8472430 - 8472482
Alignment:
| Q |
298 |
agacgatcgagccaattcttaacattttggttatggtacttctttgtctctgc |
350 |
Q |
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| T |
8472430 |
agacgatcaagccaattcttaacattttggttctggtacttctttgtctctgc |
8472482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 6838028 - 6837991
Alignment:
| Q |
313 |
ttcttaacattttggttatggtacttctttgtctctgc |
350 |
Q |
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| T |
6838028 |
ttcttcacattttggttttggtacttctttgtctctgc |
6837991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 10674105 - 10673956
Alignment:
| Q |
134 |
acagccatgtaatttgggatcaatacaattagaaaggggtgaatcatttgtggtgctttatggattttatcaattgtttgtagccgattaatgaatttaa |
233 |
Q |
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| T |
10674105 |
acagccatgtaatttgggatcaatacaattagaaatgggtgaattatttgtggtgctttatgaattttatcaattgtttgtagccgattaatgcatttaa |
10674006 |
T |
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| Q |
234 |
ttgaattttatgattttaaatgattgttgatgggttgtttactgattcat |
283 |
Q |
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| T |
10674005 |
ttgaattttatgattttaaatgattgttgatgagttgtttactgattcat |
10673956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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