View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_20 (Length: 318)
Name: NF0606_low_20
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 35491175 - 35491423
Alignment:
| Q |
30 |
accttcccctcatattgccttccatttgttgaagaaactaatactccagcacccatctctcaaatgtgt--gtatcttaaggtttaggcatacatgtcga |
127 |
Q |
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| T |
35491175 |
accttcccctcatattgccttccatttgttgaagaaactaatactccagcacccatctctcaaatgtgtacgtatcttaaggtt---------------- |
35491258 |
T |
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| Q |
128 |
tgatatacacttgtgctcaagtttatttctataaatgttatatgtccaaaattatgactgttttctaacatcaacagttgctaataagataagatgagag |
227 |
Q |
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| T |
35491259 |
----atacacttgtgctcaagtttatttctataaatgttatatgtccaaaattatgactgttttctaacatcaacagttgctaataagataagatgagag |
35491354 |
T |
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| Q |
228 |
aagaagtcaaaactaaaacaaacaattccttcaacaatacatattattttagtattttgattatctgtg |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
35491355 |
aagaagtcaaaactaaaacaaataattccttcaacagtacatattattttagtattttgattacctgtg |
35491423 |
T |
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