View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_26 (Length: 262)
Name: NF0606_low_26
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 32055225 - 32055432
Alignment:
| Q |
18 |
tgagatgaagacacattgatcgttttggagtaaatacaaacaaaacatgataatacaagataaaattgtattagataatccacgataatgaatacttgac |
117 |
Q |
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| T |
32055225 |
tgagaagaagacacattgatcgttttgggataaatacaaacaaaacataataatacaaaataaaattgtattagataatccacgttaatgaatacttgac |
32055324 |
T |
|
| Q |
118 |
cacttgacgcacaatgtgtatgcaaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacattcattattttccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32055325 |
cacttgacgcacaatgtgtatgcaaatttaaaagggtcccggccttatatatgttacatgaaaatccaaacaaattacaataa----cattattttccaa |
32055420 |
T |
|
| Q |
218 |
agggtttttctt |
229 |
Q |
| |
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|| ||||||||| |
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| T |
32055421 |
agagtttttctt |
32055432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 20996249 - 20996310
Alignment:
| Q |
51 |
atacaaacaaaacatgataatacaagataaaattgtattagataatccacgataatgaatac |
112 |
Q |
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| T |
20996249 |
atacaaacaaaacatgataataaaatataaaattgtattgcataatccacattaatgaatac |
20996310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 20996329 - 20996390
Alignment:
| Q |
140 |
caaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataac |
201 |
Q |
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| T |
20996329 |
caaattcaaaggagtcctagtcttagatatgttacataaaaatacaaacaaattacaataac |
20996390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 8085937 - 8086063
Alignment:
| Q |
69 |
aatacaagataaaattgtattagataatccacgataatgaatacttgaccacttgacgcacaatgtgtatgcaaatttaaaagtgtcccagccttatata |
168 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||| || || || |||||| |||||||||||||||| ||| || |||| ||| |
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| T |
8085937 |
aatacaagataaaattatattagataatccacattaatgaataatttaca---tg-----caatgtatatgcaaatttaaaaggatcctagtcttacata |
8086028 |
T |
|
| Q |
169 |
tgttacatgaaaatccaaacaaattacaataacat |
203 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
8086029 |
tgttacatgaaaatccaaacaaattagaataacat |
8086063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 30333218 - 30333144
Alignment:
| Q |
129 |
caatgtgtatgcaaatttaaaagtgtcccagccttatatatgttacatgaaaatccaaacaaattacaataacat |
203 |
Q |
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||||||||||| |||||| ||| |||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30333218 |
caatgtgtatgataatttataagggtcctagtcttaaatatgttacatgaaaatccaaacaaattacaataacat |
30333144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 7580925 - 7580976
Alignment:
| Q |
46 |
agtaaatacaaacaaaacatgataatacaagataaaattgtattagataatc |
97 |
Q |
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||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
7580925 |
agtaaatacaaacaaaacatgataacataagataaaatcgtattagataatc |
7580976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 26511533 - 26511481
Alignment:
| Q |
48 |
taaatacaaacaaaacatgataatacaagataaaattgtattagataatccac |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||| || | ||||||||| |
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| T |
26511533 |
taaatacaaccaaaacatgataatacaagataaaattgaataatataatccac |
26511481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 19828276 - 19828221
Alignment:
| Q |
59 |
aaaacatgataatacaagataaaatt---gtattagataatccacgataatgaata |
111 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
19828276 |
aaaacatgataatacaagataaaattgtagtattagataatccacattaatgaata |
19828221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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