View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_27 (Length: 253)
Name: NF0606_low_27
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10279947 - 10280177
Alignment:
| Q |
1 |
tttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagag |
100 |
Q |
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| T |
10279947 |
tttcatatggagccttcaagaatgacactatatagatatggtaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagag |
10280046 |
T |
|
| Q |
101 |
ttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcctaaatcatt |
200 |
Q |
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| T |
10280047 |
ttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcctaaatcatt |
10280146 |
T |
|
| Q |
201 |
gaaaaatgcttggatggatgagattgatgat |
231 |
Q |
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| T |
10280147 |
gaaaaatgcttggatggatgagattgatgat |
10280177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 27776601 - 27776419
Alignment:
| Q |
10 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
109 |
Q |
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| T |
27776601 |
gagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaag |
27776502 |
T |
|
| Q |
110 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
192 |
Q |
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| T |
27776501 |
gtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
27776419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 19742962 - 19742781
Alignment:
| Q |
10 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
109 |
Q |
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| T |
19742962 |
gagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaag |
19742863 |
T |
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| Q |
110 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
191 |
Q |
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| T |
19742862 |
gtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19742781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 19797126 - 19797307
Alignment:
| Q |
10 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
109 |
Q |
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| T |
19797126 |
gagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaag |
19797225 |
T |
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| Q |
110 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
191 |
Q |
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| ||| |||||||||||| || ||||| |||||||||||| ||| ||||||||||||| ||| || | |||||||||||| |
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| T |
19797226 |
gtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19797307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 19539919 - 19539738
Alignment:
| Q |
10 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
109 |
Q |
| |
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| T |
19539919 |
gagccttcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaag |
19539820 |
T |
|
| Q |
110 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
191 |
Q |
| |
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| ||| |||||||||||| || ||||| ||| |||||||| ||| ||||||||||||| ||| || |||||||||||||| |
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| T |
19539819 |
gtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatcc |
19539738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 19671842 - 19671661
Alignment:
| Q |
10 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
109 |
Q |
| |
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|||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || ||||| ||| | |
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| T |
19671842 |
gagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagagtatgaaaag |
19671743 |
T |
|
| Q |
110 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
191 |
Q |
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| ||| |||||||||||| || ||||| |||||||||||| ||| ||| ||||||||| ||| || | |||||||||||| |
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| T |
19671742 |
gtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatcc |
19671661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 15239601 - 15239718
Alignment:
| Q |
64 |
tggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctg |
163 |
Q |
| |
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|||||||||||| ||||| ||||||||| ||||| ||||||| || ||| | ||||||||| || ||||| ||||| |||||| ||||| ||||| |
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| T |
15239601 |
tggtatgaattggcttatactgaagctaaagggaggattaaaaaaggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctg |
15239700 |
T |
|
| Q |
164 |
tttggtatgctttgaaga |
181 |
Q |
| |
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||||| | || ||||||| |
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| T |
15239701 |
tttggaaagcattgaaga |
15239718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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