View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_3 (Length: 542)
Name: NF0606_low_3
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 131 - 536
Target Start/End: Original strand, 36153703 - 36154108
Alignment:
| Q |
131 |
ctaattaaacgcatcttctaatattgattttgttgtttctacttcaatatccttgtatcttgatgagctagcatacgtacttttagccttaaaaaaggtg |
230 |
Q |
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| T |
36153703 |
ctaattaaacgcatcttctaatattgattttgttatttctacttcaatatccttgtatcttgatgagctagcatacgtacttttagccttaaaaaaggtg |
36153802 |
T |
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| Q |
231 |
ggttctaacacttcatgcagttggattacatgcttgtacatattaatacaccttataggctctaacactacctatcatacacaaatcttacctccctcac |
330 |
Q |
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| T |
36153803 |
ggttctaacacttcatgcagttggattacatgcttgtacatattaatacaccttataggctctaacactacctatcatacacaaatcttacctccctcac |
36153902 |
T |
|
| Q |
331 |
catttatcagttacaatactatgatacaccacctttccatgacagacaaagaagatttgttctatcagaaactgcacctttctgacaaaacattgcacct |
430 |
Q |
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| T |
36153903 |
catttatcagttacaatactatgatacaccacctttccatgacagacaaagaagatttgttctatcagaaactgcacctttctgacaaaacattgcacct |
36154002 |
T |
|
| Q |
431 |
aattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacaacaacatcaagcaataataagcattagtat |
530 |
Q |
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| T |
36154003 |
aattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacagcaacatcaagcaataataagcattagtat |
36154102 |
T |
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| Q |
531 |
aatcta |
536 |
Q |
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| |||| |
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| T |
36154103 |
actcta |
36154108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 406 - 514
Target Start/End: Original strand, 36150588 - 36150696
Alignment:
| Q |
406 |
acctttctgacaaaacattgcacctaattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacaacaac |
505 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36150588 |
acctttctgataaaacattgcacctaattaaccaatcattaatttccatctccctaaactataaaagccaaccctttctcccctcttcctccacaacacc |
36150687 |
T |
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| Q |
506 |
atcaagcaa |
514 |
Q |
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| T |
36150688 |
accaagcaa |
36150696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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