View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_36 (Length: 205)
Name: NF0606_low_36
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_36 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 29377486 - 29377291
Alignment:
| Q |
10 |
aagaatattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaacattatattggccacaatcccttcttgtatccca |
109 |
Q |
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| T |
29377486 |
aagagtatttccaaatggcaagacattggtagttgttacggagagatgaagaagctgaagctgggacattatattgaccacaatcccctcttgcatgcca |
29377387 |
T |
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| Q |
110 |
caataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttca |
205 |
Q |
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| T |
29377386 |
caatgaatcttgattaacacttcattccctagaaccctagcttcaacctctacaagtgattcatttcgcccgtaacattcttcagttttcatttca |
29377291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 45039733 - 45039538
Alignment:
| Q |
10 |
aagaatattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaacattatattggccacaatcccttcttgtatccca |
109 |
Q |
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| T |
45039733 |
aagagtatttccaaatggcaagacattgatacttgttatggacagatgaagaagttgaagctgggacattatattgaccacaatcccttcttgcattcca |
45039634 |
T |
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| Q |
110 |
caataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttca |
205 |
Q |
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| T |
45039633 |
caataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctcccgtaacattcttcagtgttcatttca |
45039538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 45065543 - 45065450
Alignment:
| Q |
112 |
ataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttca |
205 |
Q |
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| T |
45065543 |
ataaatcttaattgacacttccttcccaagaactctagcatcaacctttagaagtgatttatttcggccataacattcttcagtgttcatttca |
45065450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 45082857 - 45083052
Alignment:
| Q |
10 |
aagaatattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaacattatattggccacaatcccttcttgtatccca |
109 |
Q |
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| T |
45082857 |
aagagtatttccaaatggcaagacattggtagttgttatggagagatgaagaatttgaagctgcaaaattatattgaccagaatctccttttacttccca |
45082956 |
T |
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| Q |
110 |
caataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttca |
205 |
Q |
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| T |
45082957 |
cagcgaatcttgattaacacttccttccctagaaccctcacttcaagctctggaaatgtttcattgtgccgataacattctttagtgttcatttca |
45083052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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