View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_5 (Length: 518)
Name: NF0606_low_5
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 83 - 457
Target Start/End: Original strand, 26721764 - 26722138
Alignment:
| Q |
83 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctca |
182 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
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| T |
26721764 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttatctca |
26721863 |
T |
|
| Q |
183 |
ttctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaa |
282 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26721864 |
ttctcttcttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaa |
26721963 |
T |
|
| Q |
283 |
aaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26721964 |
aaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaa |
26722063 |
T |
|
| Q |
383 |
aacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctccaattaattttttcatctcactc |
457 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
26722064 |
gacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
26722138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 83 - 457
Target Start/End: Complemental strand, 45117145 - 45116784
Alignment:
| Q |
83 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctca |
182 |
Q |
| |
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||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
45117145 |
gctgccatcctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttatctca |
45117046 |
T |
|
| Q |
183 |
ttctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaa |
282 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117045 |
ttctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaa |
45116946 |
T |
|
| Q |
283 |
aaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaa |
382 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45116945 |
aaaccatgagccttggattatgatt-------------tgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaa |
45116859 |
T |
|
| Q |
383 |
aacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctccaattaattttttcatctcactc |
457 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
45116858 |
gacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
45116784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 83 - 457
Target Start/End: Original strand, 2987232 - 2987594
Alignment:
| Q |
83 |
gctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnn-ctc |
181 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
2987232 |
gctgccatcctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctc |
2987331 |
T |
|
| Q |
182 |
attctcttattacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaaga |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2987332 |
attctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaaga |
2987431 |
T |
|
| Q |
282 |
aaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaa |
381 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
2987432 |
aaaaccatgagccttggattatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaa |
2987518 |
T |
|
| Q |
382 |
aaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctccaattaattttttcatctcactc |
457 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
2987519 |
agacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
2987594 |
T |
|
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