View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_7 (Length: 496)
Name: NF0606_low_7
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 117 - 485
Target Start/End: Original strand, 10306411 - 10306770
Alignment:
| Q |
117 |
tctcattccaccatcacttctctctctctaacctctttcgtttttctctccatggattcagtattctccaccattctcatcattctcgctattctcttca |
216 |
Q |
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| T |
10306411 |
tctcattccaccatcacttctctctctctaacctctttcgtttttctctccatggattcagtattctccaccattctcatcattctcgctattctcttca |
10306510 |
T |
|
| Q |
217 |
tcaccttcatgctttcactcatgctccgtttccttcaaatccgcgtaaatcgccgacgtctcctctccgattcaacaccaccgcgatcaccacaaccacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10306511 |
tcaccttcatgctttcactcatgctccgtttccttcaactccgcataaatcgccgacgtctcctctccgattcaacaccaccgcgatcacca-------- |
10306602 |
T |
|
| Q |
317 |
gccaccattgacgatgattgttactgagtcgcctccagcttcactaaacatcgactcactccctccgattcctttccatttcacctccgattcaacacca |
416 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10306603 |
-ccaccattgacgacgattgttactgagtcgcctccagcttcactaaacatcgactcactccctccgattccgttccatttcacctccgattcaacacca |
10306701 |
T |
|
| Q |
417 |
ccgccgtcgcaaccacctccaccggcgcgggaaatacaacgagcaatcgattcacttcctacgtttcat |
485 |
Q |
| |
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||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10306702 |
ccgtcgtcgcaaccacctcaacctgcgccggaaatacaacgagcaatcgattcacttcctacgtttcat |
10306770 |
T |
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