View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0606_low_8 (Length: 477)
Name: NF0606_low_8
Description: NF0606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0606_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 45039578 - 45039123
Alignment:
| Q |
1 |
gtgattcatttctcccgtaacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039578 |
gtgattcatttctcccgtaacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcc |
45039479 |
T |
|
| Q |
101 |
tgcatctttcttcttaatgtcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039478 |
tgcatctttcttcttaatgtcttcttctagctctttcaaacgttcttcaagttgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatc |
45039379 |
T |
|
| Q |
201 |
tacacagacattagatagtttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataatatattaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039378 |
tacacagacattagatagtttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataatatattaca |
45039279 |
T |
|
| Q |
301 |
tactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatctagtgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45039278 |
tactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctatttctctctgacattatgtgatctagtgt |
45039179 |
T |
|
| Q |
401 |
atccgaagtgtttcgaggcttcttcgaatttgacccttgtttagctgttgatgatg |
456 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
45039178 |
atccgaagtgtttcgaggcttcttcgaattcgacccttggttagctgttgatgatg |
45039123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 161 - 444
Target Start/End: Complemental strand, 45065054 - 45064773
Alignment:
| Q |
161 |
gtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagtttttagtttgtagcttctatccaatgataactactatataa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| || | ||||||| |||||| | | |||| ||||||||||||||||||||||| || |
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| T |
45065054 |
gtaattgatagcttccgttaccacatgaaccgtatcaatctacatagcctttagataatttttattgtatagcatctatccaatgataactactataaaa |
45064955 |
T |
|
| Q |
261 |
aaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagta |
360 |
Q |
| |
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|| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| | |
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| T |
45064954 |
aa--ttactcattcatctaggtttaatataatatgttatagactaaccttcttcaatcctggtataaagctcgaaagttatatgatcttacttgtaagaa |
45064857 |
T |
|
| Q |
361 |
gttgtctcctattcctctctgacattatgtgatctagtgtatccgaagtgtttcgaggcttcttcgaatttgacccttgtttag |
444 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||| ||| || ||| | ||||||||||||||||||||||||||||||||| |
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| T |
45064856 |
gttgtctcatattcctctctgacattatgtgacctactgtctcataagcgcttcgaggcttcttcgaatttgacccttgtttag |
45064773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45065490 - 45065330
Alignment:
| Q |
1 |
gtgattcatttctcccgtaacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcc |
100 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| || | | ||||||||||||||| ||| | |||||||||||| |||||| |||||| |
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| T |
45065490 |
gtgatttatttcggccataacattcttcagtgttcatttcacctatcgtagtgtctttgtcaattagtacatgggatcttgttatgttgctcattgatcc |
45065391 |
T |
|
| Q |
101 |
tgcatctttcttcttaatgtcttcttctagctctttcaaacgttcttcaagctgtttcatg |
161 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||| |
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| T |
45065390 |
tgcatctttcttcttaatgttttcttcaagctctttcaaacgctcttcaagttgtttcatg |
45065330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 45083029 - 45083266
Alignment:
| Q |
18 |
taacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaa |
117 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||| |||||| | | | ||||||||||||||||| |||||||||| ||| |||||||||| | |
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| T |
45083029 |
taacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatgagatcttgttatggtgatcaatgatcccgcacctttcttcttga |
45083128 |
T |
|
| Q |
118 |
tgtcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagata |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||| || ||| |||| |||||| || ||||||||||| || ||||||||| ||||||||| |
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| T |
45083129 |
tgtcttcttctagctctttcacacgttcttgaagttgtgccacgtacttgacagcttctcctagtacatgaaccttgtccgtctacacagccattagata |
45083228 |
T |
|
| Q |
218 |
gtttttagtttgtagcttctatccaatgataactactata |
257 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||| |
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| T |
45083229 |
agtctt--tttatagcttctatccaatgataactactata |
45083266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 436
Target Start/End: Original strand, 45083328 - 45083469
Alignment:
| Q |
295 |
attacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatc |
394 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| || || ||||||||||||| ||| ||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
45083328 |
attacagactaaccttcttcagtccaggtataaatgctgaaagttctatgaactttcttgtaagttcacgtctcctgttcctctctgttattatgtgatc |
45083427 |
T |
|
| Q |
395 |
tagtgtatccgaagtgtttcgaggcttcttcgaatttgaccc |
436 |
Q |
| |
|
||| || || |||| | |||||| |||| | ||||| ||||| |
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| T |
45083428 |
tagcgtctcagaagcgcttcgagtcttccttgaattcgaccc |
45083469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 29377331 - 29377084
Alignment:
| Q |
1 |
gtgattcatttctcccgtaacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||| | |||||| |||||||||||||||| | | | ||||||||||||||||||| ||| || |
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|
| T |
29377331 |
gtgattcatttcgcccgtaacattcttcagttttcatttcatctattgcagtgtctttgtcaattaagatatgggatcttgttatggtgctcactgaccc |
29377232 |
T |
|
| Q |
101 |
tgcatctttcttcttaatgtcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatc |
200 |
Q |
| |
|
|| |||||||| || || |||||| ||||| |||| | |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29377231 |
tgtgtctttctttttgatatcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatc |
29377132 |
T |
|
| Q |
201 |
tacacagacattagatagtttttagtttgtagcttctatccaatgataac |
250 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||||||| ||||| |
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|
| T |
29377131 |
tacacaaccattagataattttta--ttgtagcttctatccaattataac |
29377084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 243 - 439
Target Start/End: Complemental strand, 29376024 - 29375830
Alignment:
| Q |
243 |
atgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttcta |
342 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
29376024 |
atgataactactata--aaaatttactcatttgtcctggtttaatataatatattacaaactcaccttctttaatccaggtataaaggccgaaagttcta |
29375927 |
T |
|
| Q |
343 |
tgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatctagtgtatccgaagtgtttcgaggcttcttcgaatttgacccttg |
439 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| | ||| ||||||||| ||||| |||||||| |
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|
| T |
29375926 |
tgatcttccttgtaagtagctgtctcctattcctctctgacattatgtgatctagtgtctcagaagcgcttctaggcttctttgaattcgacccttg |
29375830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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