View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0607_high_1 (Length: 385)

Name: NF0607_high_1
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0607_high_1
NF0607_high_1
[»] chr8 (14 HSPs)
chr8 (1-366)||(30501453-30501818)
chr8 (112-360)||(7555043-7555291)
chr8 (114-362)||(27083213-27083461)
chr8 (94-260)||(43254122-43254288)
chr8 (320-362)||(23942121-23942163)
chr8 (237-362)||(40467547-40467672)
chr8 (114-278)||(43613442-43613606)
chr8 (103-162)||(6900483-6900542)
chr8 (228-287)||(7452064-7452123)
chr8 (124-173)||(30261296-30261345)
chr8 (234-290)||(412732-412788)
chr8 (98-158)||(8639329-8639389)
chr8 (228-284)||(19385082-19385138)
chr8 (125-173)||(23941926-23941974)
[»] chr6 (18 HSPs)
chr6 (1-375)||(11468070-11468447)
chr6 (103-358)||(4474290-4474540)
chr6 (127-364)||(33804392-33804629)
chr6 (106-363)||(4406602-4406859)
chr6 (237-362)||(6004689-6004814)
chr6 (238-362)||(26010594-26010718)
chr6 (1-53)||(13208964-13209016)
chr6 (98-163)||(24749230-24749295)
chr6 (103-183)||(10008713-10008793)
chr6 (238-362)||(24378499-24378623)
chr6 (98-362)||(31297438-31297702)
chr6 (228-290)||(1682758-1682820)
chr6 (237-290)||(33745816-33745869)
chr6 (238-362)||(21548570-21548694)
chr6 (98-209)||(23066497-23066608)
chr6 (106-160)||(9051078-9051132)
chr6 (124-160)||(1568886-1568922)
chr6 (240-304)||(15673549-15673613)
[»] chr7 (28 HSPs)
chr7 (1-375)||(42430808-42431184)
chr7 (127-298)||(5020930-5021101)
chr7 (127-271)||(26078780-26078924)
chr7 (127-271)||(26102567-26102711)
chr7 (127-363)||(37724178-37724415)
chr7 (94-215)||(31025940-31026061)
chr7 (237-362)||(8771155-8771280)
chr7 (237-361)||(34458453-34458577)
chr7 (94-247)||(19728065-19728218)
chr7 (240-304)||(13439777-13439841)
chr7 (238-362)||(41801176-41801300)
chr7 (228-290)||(15654071-15654133)
chr7 (229-362)||(38780544-38780677)
chr7 (103-260)||(42565416-42565573)
chr7 (234-290)||(28327074-28327130)
chr7 (98-162)||(38780744-38780808)
chr7 (104-162)||(5326359-5326417)
chr7 (99-289)||(43571736-43571926)
chr7 (228-290)||(46623416-46623478)
chr7 (94-260)||(47106006-47106172)
chr7 (124-209)||(6909659-6909744)
chr7 (99-260)||(13554574-13554735)
chr7 (134-219)||(43021936-43022021)
chr7 (127-183)||(9975444-9975500)
chr7 (124-160)||(15747389-15747425)
chr7 (228-284)||(29113921-29113977)
chr7 (10-42)||(34344305-34344337)
chr7 (124-160)||(34344410-34344446)
[»] chr1 (16 HSPs)
chr1 (3-375)||(44415281-44415646)
chr1 (115-375)||(44929835-44930094)
chr1 (127-364)||(16873784-16874021)
chr1 (127-361)||(34853935-34854169)
chr1 (228-287)||(36928879-36928938)
chr1 (234-304)||(32353649-32353719)
chr1 (95-173)||(39730280-39730358)
chr1 (240-304)||(48073784-48073848)
chr1 (228-290)||(14365991-14366053)
chr1 (99-173)||(41503384-41503458)
chr1 (267-360)||(30970904-30970997)
chr1 (228-304)||(47116000-47116076)
chr1 (228-287)||(36305496-36305555)
chr1 (228-290)||(4644725-4644787)
chr1 (234-304)||(38231405-38231475)
chr1 (228-284)||(49969039-49969095)
[»] chr4 (19 HSPs)
chr4 (1-213)||(22540155-22540368)
chr4 (127-289)||(20669097-20669259)
chr4 (95-280)||(4525003-4525188)
chr4 (237-362)||(46639284-46639409)
chr4 (238-362)||(26693649-26693773)
chr4 (228-290)||(7663604-7663666)
chr4 (234-304)||(23873828-23873898)
chr4 (234-304)||(55298341-55298411)
chr4 (237-362)||(53809562-53809687)
chr4 (234-359)||(4640975-4641096)
chr4 (234-290)||(23279325-23279381)
chr4 (228-290)||(3130345-3130407)
chr4 (94-260)||(37615147-37615313)
chr4 (112-162)||(42169513-42169563)
chr4 (228-290)||(47540637-47540699)
chr4 (94-158)||(10353526-10353590)
chr4 (228-287)||(1121013-1121072)
chr4 (94-269)||(42953880-42954055)
chr4 (130-194)||(8655535-8655599)
[»] chr3 (26 HSPs)
chr3 (127-358)||(19824093-19824324)
chr3 (98-364)||(9163421-9163687)
chr3 (96-339)||(54440430-54440673)
chr3 (237-362)||(45683897-45684022)
chr3 (103-269)||(10867287-10867453)
chr3 (256-362)||(20822791-20822897)
chr3 (234-304)||(23601491-23601561)
chr3 (94-188)||(27497340-27497434)
chr3 (228-290)||(30167711-30167773)
chr3 (237-361)||(9319430-9319554)
chr3 (226-280)||(27969111-27969165)
chr3 (98-160)||(36708467-36708529)
chr3 (114-183)||(9319608-9319677)
chr3 (104-260)||(20198491-20198647)
chr3 (124-188)||(38926392-38926456)
chr3 (238-362)||(42675732-42675856)
chr3 (234-313)||(2813843-2813922)
chr3 (98-161)||(26009624-26009687)
chr3 (228-290)||(13448190-13448252)
chr3 (94-188)||(14868253-14868347)
chr3 (228-290)||(49732299-49732361)
chr3 (95-168)||(27968818-27968891)
chr3 (237-362)||(36708602-36708727)
chr3 (234-290)||(7146759-7146815)
chr3 (228-284)||(47536980-47537036)
chr3 (94-158)||(53946398-53946462)
[»] chr2 (19 HSPs)
chr2 (102-349)||(4040354-4040601)
chr2 (103-245)||(26490664-26490806)
chr2 (97-361)||(8066521-8066785)
chr2 (94-260)||(11234860-11235026)
chr2 (94-215)||(3119545-3119666)
chr2 (237-362)||(28400844-28400969)
chr2 (234-304)||(33547590-33547660)
chr2 (228-290)||(45421230-45421292)
chr2 (234-290)||(13549842-13549898)
chr2 (103-215)||(32244043-32244155)
chr2 (265-352)||(31774433-31774520)
chr2 (127-187)||(37139313-37139373)
chr2 (99-157)||(6267469-6267527)
chr2 (320-362)||(37643302-37643344)
chr2 (94-215)||(9669447-9669568)
chr2 (229-362)||(36803625-36803758)
chr2 (124-212)||(31594162-31594250)
chr2 (126-162)||(36803522-36803558)
chr2 (234-290)||(43627217-43627273)
[»] chr5 (16 HSPs)
chr5 (127-364)||(35122998-35123235)
chr5 (237-362)||(19182127-19182252)
chr5 (103-269)||(8571517-8571683)
chr5 (94-219)||(19513902-19514027)
chr5 (105-269)||(4399466-4399630)
chr5 (228-290)||(10487272-10487334)
chr5 (301-361)||(6866237-6866297)
chr5 (104-183)||(3199600-3199679)
chr5 (253-363)||(31862330-31862440)
chr5 (234-304)||(32918035-32918105)
chr5 (98-160)||(34311780-34311842)
chr5 (241-290)||(34858059-34858108)
chr5 (1-54)||(41455759-41455812)
chr5 (228-284)||(4922946-4923002)
chr5 (141-269)||(17737781-17737909)
chr5 (124-160)||(29095002-29095038)
[»] scaffold0308 (2 HSPs)
scaffold0308 (95-218)||(16241-16364)
scaffold0308 (223-364)||(16853-16994)
[»] scaffold0418 (1 HSPs)
scaffold0418 (228-290)||(7387-7449)
[»] scaffold0014 (1 HSPs)
scaffold0014 (237-362)||(71997-72122)
[»] scaffold0112 (1 HSPs)
scaffold0112 (114-183)||(16075-16144)
[»] scaffold0029 (1 HSPs)
scaffold0029 (130-194)||(135098-135162)
[»] scaffold0002 (2 HSPs)
scaffold0002 (130-194)||(312925-312989)
scaffold0002 (130-194)||(328379-328443)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 30501453 - 30501818
Alignment:
Q  1 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaacagagtcaaaacctaacagagaactgaaaacaaatacaaggtggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30501453 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaacagagtcaaaacctaacagagaactgaaaacaaacacaaggtggtt 30501552  T
Q  101 aaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagattt 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30501553 aaccaatgcctaaacaagccaaggggcttgaccaccacctatgagtaccaaaaacaaacatggcttttttagccgtcaaccacgctaaggacaaagattt 30501652  T
Q  201 aatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaat 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  30501653 aatcttatcaagcaacctaggtacatcagttataacattattaaacagacggttattacgttcattccacaaaacccaagcacaaagaagccagattaat 30501752  T
Q  301 tgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatcagct 366  Q
    ||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  30501753 tgcaagaacaaacgcttaactttaccaacacctaccatatgagtaaactgcaccaaatgatcagct 30501818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 112 - 360
Target Start/End: Original strand, 7555043 - 7555291
Alignment:
Q  112 aaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaa 211  Q
    |||||||||||  | ||||||||||||||| |||||||||| ||||||||| || |||||||  |||||||  |||| || ||  |||||||||||||||    
T  7555043 aaacaagccaaatgacttgaccaccacctccgagtaccaaatacaaacatgactattttagctttcagccatcctaacgataacaatttaatcttatcaa 7555142  T
Q  212 gcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacga 311  Q
    |||| ||    | ||| |||| | ||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||  ||||  |||||    
T  7555143 gcaatctggtgatatcggttagagcattattaaacagacggttattacgttcgttccgcaaaactcaagtacaaagaagtcagattagctgcagaaacga 7555242  T
Q  312 acacttaactttaccaacacctgccatatgaataaactgcaccaaatga 360  Q
    ||   || ||||||||||| ||| ||||| | |||| ||||||||||||    
T  7555243 acgtctagctttaccaacatctgtcatataagtaaattgcaccaaatga 7555291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 362
Target Start/End: Original strand, 27083213 - 27083461
Alignment:
Q  114 acaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagc 213  Q
    |||||| || |||||||| |||||||||||||||| ||||||||||||| | |||||| |  |||| ||  ||| ||| ||  |||||| |||||| | |    
T  27083213 acaagctaaagggcttgatcaccacctctgagtacgaaaaacaaacatgacatttttaactttcagtcatcctatggataacaatttaaccttatctaac 27083312  T
Q  214 aacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaac 313  Q
    |  | | | |||   |||| || |||||| || | |||||| |||||||| ||||||| |||||||| ||| || ||||| ||||  |||| ||||||||    
T  27083313 agtcgaggaacagaggttacaatattattgaaaatacggttgttacgttcattccacacaacccaagtacacagtagtcaaattagctgcaggaacgaac 27083412  T
Q  314 acttaactttaccaacacctgccatatgaataaactgcaccaaatgatc 362  Q
      ||| ||||||||||||||| ||||| | |||||||||||||||||||    
T  27083413 gtttagctttaccaacacctgtcatataagtaaactgcaccaaatgatc 27083461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 43254288 - 43254122
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||||||| |||||||| ||||||| ||| || |||||||||||| ||||||| |||||||||||  |||| ||||||||  |||||||| |||| || |    
T  43254288 ggtggttagccaatgcccaaacaagtcaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 43254189  T
Q  194 aagatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
    |  ||||||| ||||||||||| ||| |  | || |||| |||||| ||||||| ||| || |||||    
T  43254188 acaatttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacg 43254122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 23942121 - 23942163
Alignment:
Q  320 ctttaccaacacctgccatatgaataaactgcaccaaatgatc 362  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  23942121 ctttaccaacacctgtcatatgagtaaactgcaccaaatgatc 23942163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 40467547 - 40467672
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| |||| |||||| |||||||| ||||| | |||||||| ||| | ||| || || |   ||| ||| ||||  ||| ||||||||||||||  |    
T  40467547 attattgaacaaacggttgttacgttcattccatataacccaagaacacaaaagccaaataagccgcatgaatgaacttttagctttaccaacacctatc 40467646  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    |||||| |||||||||||||||||||    
T  40467647 atatgagtaaactgcaccaaatgatc 40467672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 278
Target Start/End: Complemental strand, 43613606 - 43613442
Alignment:
Q  114 acaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagc 213  Q
    |||||| || ||||| ||||||||| |||| || ||| | | ||||||||| ||||||||| |||||||| || | || ||  |||| | |||||| | |    
T  43613606 acaagctaaagggctagaccaccacatctgggtgccatacataaacatggcatttttagccttcagccaccctgaagataacaatttgaccttatctaac 43613507  T
Q  214 aacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaaccca 278  Q
    |  | | | ||||  |||| || |||||||||||||||||| |||||||| ||||||| ||||||    
T  43613506 agacgaggaacatgtgttacaatattattaaacagacggttgttacgttcattccacacaaccca 43613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 6900483 - 6900542
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatg 162  Q
    |||||||| |||||||| || ||| ||| |||||||||||| || |||||||||||||||    
T  6900483 ccaatgcccaaacaagcaaaagggtttgtccaccacctctgcgtgccaaaaacaaacatg 6900542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 7452064 - 7452123
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaag 287  Q
    |||||||||||||||||||||||| |||||  |||| ||||||| ||||||  |||||||    
T  7452064 agttataacattattaaacagacgattattttgttcattccacacaacccagtcacaaag 7452123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 30261296 - 30261345
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagc 173  Q
    |||||||||||||||  |||||||||||||||||| ||| | ||||||||    
T  30261296 gggcttgaccaccactactgagtaccaaaaacaaatatgacatttttagc 30261345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 412788 - 412732
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||| |||||||||||||||||| ||||| ||||| | ||||||  ||||||||||    
T  412788 aacatgattaaacagacggttatttcgttcattccaaacaacccagacacaaagaag 412732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 8639329 - 8639389
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaa 158  Q
    |||| |||||||| |||||| | || ||||| |||||||||||||| ||| ||||||||||    
T  8639329 gttagccaatgcccaaacaaactaaagggctcgaccaccacctctgcgtatcaaaaacaaa 8639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 19385138 - 19385082
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcaca 284  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| ||| || |||||    
T  19385138 agttattacattattaaacagacgattatttcgttcattccacacaacacaggcaca 19385082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 23941926 - 23941974
Alignment:
Q  125 ggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagc 173  Q
    ||||||||||||| ||||| |||||| |||||||||| || ||||||||    
T  23941926 ggcttgaccaccatctctgcgtaccataaacaaacattgcctttttagc 23941974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 11468070 - 11468447
Alignment:
Q  1 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaacagagtcaaaacctaa----cagagaactgaaaacaaatacaaggt 96  Q
    |||||||||||||||||||| | | |||||||||||||||| ||||||||| |  ||||||||| || ||    || ||||||||||||||| |||||||    
T  11468070 aatagtagctcccaagcacaggatgtgcctagaagaccactccaacaatactacaagagtcaaatccaaaagaacaaagaactgaaaacaaa-acaaggt 11468168  T
Q  97 ggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaag 196  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||| |||| |||||||||| ||| |||||||| ||| ||||    
T  11468169 ggttaaccaattcctaaacaagtcaaagggcttgaccaccacctttaagtaccaaaaacaaaaatggtttttttagccttcaaccacgctagggataaag 11468268  T
Q  197 atttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagat 296  Q
    ||||||||||||||||||||||| | ||||| | |||||||||||| || || ||| || | |||||||||||||||| ||||||| ||| ||| |||||    
T  11468269 atttaatcttatcaagcaacctagggacatcgggtataacattattgaataggcggctaatgcgttcgttccacaaaatccaagcagaaaaaagccagat 11468368  T
Q  297 taattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatcagctacagtatta 375  Q
    ||||||||  ||| ||||||||  ||||||| ||| || ||||||| ||||||| |||||||||  ||||||| |||||    
T  11468369 taattgcataaacaaacacttagttttaccaccacttggcatatgagtaaactgaaccaaatgacgagctacattatta 11468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 358
Target Start/End: Original strand, 4474290 - 4474540
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
    |||||||||||||| ||||  || |||||||||||||||||||||||| |||     ||||||||||||||  ||||||||  |||||| ||  ||||||    
T  4474290 ccaatgcctaaacatgccataggacttgaccaccacctctgagtaccataaa-----atggcttttttagctttcagccaccttaaggataacaatttaa 4474384  T
Q  203 tcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattg 302  Q
    ||||||| | ||||||| | ||||| |||| ||||||||||||||   |||||||||||||| ||||||  ||||||| ||||||||| ||||| |  ||    
T  4474385 tcttatccaacaacctagggacatccgttacaacattattaaacatgtggttattacgttcggtccacacgacccaagtacaaagaagccagatgagctg 4474484  T
Q  303 caagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaat 358  Q
    ||  || ||||  ||| ||||||||| ||||| || || |  ||||||||||||||    
T  4474485 cataaaggaacgtttagctttaccaaaacctgtcaaataagaaaactgcaccaaat 4474540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 364
Target Start/End: Original strand, 33804392 - 33804629
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||  | |||||| |||| || ||  ||||||||||||| | ||||||  | || |    
T  33804392 cttgaccaccacatctgagtaccataaacaaacatggcatttttagctttaagccaccctaatgataacaatttaatcttatccaacaaccttgggacgt 33804491  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttacc 326  Q
    | |||| ||||||||||||||  |||||||||||||||||| ||| || ||||| ||| | ||  |||| ||  ||||  || ||||| ||| |||||||    
T  33804492 ccgttacaacattattaaacaagcggttattacgttcgttctacacaatccaagtacacataatccagactagctgcagaaaggaacatttagctttacc 33804591  T
Q  327 aacacctgccatatgaataaactgcaccaaatgatcag 364  Q
    |||||||| || || | ||| |||||||||||||||||    
T  33804592 aacacctgtcaaataagtaagctgcaccaaatgatcag 33804629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 363
Target Start/End: Original strand, 4406602 - 4406859
Alignment:
Q  106 atgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatct 205  Q
    ||||| |||||||| || ||||| ||| |||||||||||||||||||| ||||  ||||||| |||||  |||||||  |||| |||||   ||||| ||    
T  4406602 atgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaaccaaatgtggctttcttagctttcagccaacctaaagacaacattttaacct 4406701  T
Q  206 tatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaa 305  Q
    |||| | |||||   |   |  ||||  | |||||||||||||||| || || ||||| ||||||| |||||| |||||||||||||| ||||  ||||     
T  4406702 tatccaacaaccggggagtaggagttgcatcattattaaacagacgattgtttcgttcattccacacaacccaggcacaaagaagtcatattagctgcag 4406801  T
Q  306 gaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatca 363  Q
     |||||||   || |||||||| |||||  ||||||| |||||| ||| |||||||||    
T  4406802 aaacgaacgtctagctttaccaccacctatcatatgagtaaacttcactaaatgatca 4406859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 6004689 - 6004814
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| ||||||||  ||||||||||||||| ||| | |||||| || | ||| |||||||| || ||  |||||||||||||||||    
T  6004689 attattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagtcaaataagttgtaagaacgatcattttgctttaccaacacctgcc 6004788  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||||||||||| ||||||    
T  6004789 aaatgagtaaactgcaccagatgatc 6004814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 26010594 - 26010718
Alignment:
Q  238 ttattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcca 337  Q
    ||||| || |||||||| ||||||||  ||||||||||||||| ||| | ||| || || | ||| |||||||| |  ||| ||||||||||||||||||    
T  26010594 ttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagttgtaagaacgatcttttagctttaccaacacctgcca 26010693  T
Q  338 tatgaataaactgcaccaaatgatc 362  Q
     |||| |||||||||||| ||||||    
T  26010694 aatgagtaaactgcaccagatgatc 26010718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13208964 - 13209016
Alignment:
Q  1 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaa 53  Q
    |||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  13208964 aatagtagctcccaagtacaatgtgtgcctagaagaccactacaacaatacaa 13209016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 24749230 - 24749295
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatgg 163  Q
    |||| |||||||| |||||||| || ||||||||||| || |||||||| ||||||||||||||||    
T  24749230 gttagccaatgcccaaacaagctaaagggcttgaccatcatctctgagtgccaaaaacaaacatgg 24749295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 10008793 - 10008713
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccac 183  Q
    |||||||| |||||| | |||||||||||||||||||| || |||||| | |||||| |||| ||||| ||| ||||||||    
T  10008793 ccaatgcccaaacaaactaaggggcttgaccaccacctttgggtaccagatacaaacttggcattttttgccttcagccac 10008713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 24378499 - 24378623
Alignment:
Q  238 ttattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcca 337  Q
    ||||| || |||||||| ||||||||  ||||||||||||||| ||| | |||| | || |  || |||||||| |  ||| ||||||||||||||||||    
T  24378499 ttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagtaaaataagctgtaagaacgatcttttagctttaccaacacctgcca 24378598  T
Q  338 tatgaataaactgcaccaaatgatc 362  Q
     |||  |||||||||||| ||||||    
T  24378599 aatgtgtaaactgcaccagatgatc 24378623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 362
Target Start/End: Complemental strand, 31297702 - 31297438
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaaga 197  Q
    |||| |||||||| | |||| | || |||||||||||||||||||| |||||| |||||||||| || |||||||   |||||||| |||| || ||  |    
T  31297702 gttagccaatgcccagacaatctaacgggcttgaccaccacctctgcgtaccataaacaaacattgcctttttagttttcagccactctaaagataacaa 31297603  T
Q  198 tttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagatt 297  Q
    ||| | |||||| | ||| | | |  ||  ||| | || |||||| |||| |||||| |||||||| || || | |||||||| ||| | ||| || ||     
T  31297602 tttgaccttatctaacaagcgaggagcagtagtaacaatattattgaacaaacggttgttacgttcatttcatataacccaagaacacaaaagccaaata 31297503  T
Q  298 aattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatc 362  Q
    |   ||| ||| ||||  ||| ||||||||||||||  ||||||| |||| ||||||||||||||    
T  31297502 agccgcatgaatgaacttttagctttaccaacacctctcatatgagtaaattgcaccaaatgatc 31297438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 1682758 - 1682820
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||| ||||| |||||    
T  1682758 agttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaag 1682820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 33745816 - 33745869
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||||||||||||| ||||| || || ||||||| ||||||||||||||||||    
T  33745816 attattaaacagacgattatttcgctcattccacacaacccaagcacaaagaag 33745869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 21548570 - 21548694
Alignment:
Q  238 ttattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcca 337  Q
    ||||| || |||||||| ||||||||  ||||||||||||||| ||| | ||| || || |  || |||||||| |  ||| ||||||||||||  ||||    
T  21548570 ttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagctgtaagaacgatcttttagctttaccaacacacgcca 21548669  T
Q  338 tatgaataaactgcaccaaatgatc 362  Q
     |||| |||||||||||| ||||||    
T  21548670 aatgagtaaactgcaccagatgatc 21548694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 23066608 - 23066497
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaaga 197  Q
    |||| |||||||| | |||| | || |||||||||||||||||||| |||||| |||||||||   | ||||||||  |||||||| |||| || ||  |    
T  23066608 gttagccaatgcccagacaatctaatgggcttgaccaccacctctgcgtaccataaacaaacacaacgtttttagctttcagccaccctaaagataacaa 23066509  T
Q  198 tttaatcttatc 209  Q
    ||| ||||||||    
T  23066508 tttgatcttatc 23066497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 9051078 - 9051132
Alignment:
Q  106 atgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    ||||| |||||||| || |||||||||||||| |||||||||||| | |||||||    
T  9051078 atgcccaaacaagctaaagggcttgaccaccaactctgagtaccatagacaaaca 9051132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 1568886 - 1568922
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    |||||||||||||||||||| |||||| |||||||||    
T  1568886 gggcttgaccaccacctctgcgtaccataaacaaaca 1568922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 15673549 - 15673613
Alignment:
Q  240 attaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    |||||||| ||||||||||||||| ||||| | |||||| ||||| ||||| || |||| |||||    
T  15673549 attaaacaaacggttattacgttcattccaaacaacccaggcacatagaagccaaattagttgca 15673613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 42430808 - 42431184
Alignment:
Q  1 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaacagagtcaaaaccta----acagagaactgaaaacaaatacaaggt 96  Q
    ||||||||||||||| || ||||| ||||||||| ||||||  ||||||||||  ||||||| | || |    ||| | |||| ||| | ||  ||| ||    
T  42430808 aatagtagctcccaaacaaaaggtgtgcctagaacaccactcgaacaatacaacaagagtcagatccaacaaaacaaaaaactaaaaccgaa--caaagt 42430905  T
Q  97 ggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaag 196  Q
    ||||| ||||| ||||||||||| || ||||| |||||||||||||| |||||| | ||||| |||||||||||||||   |||||||||| ||||| ||    
T  42430906 ggttagccaatacctaaacaagctaaagggctagaccaccacctctgtgtaccatagacaaaaatggcttttttagccagtagccacgctagggacatag 42431005  T
Q  197 atttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagat 296  Q
    |||||||||||||||| |||||| | ||||||| |||||||||||| || | ||||||||| |||||||||||||||| |||| || ||||||| |||||    
T  42431006 atttaatcttatcaagtaacctagggacatcagatataacattattgaaaaaacggttattgcgttcgttccacaaaatccaaacagaaagaagccagat 42431105  T
Q  297 taattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatcagctacagtatta 375  Q
    ||||||||| ||||| | |||| |||||||| |||||| ||||||  ||||||| |||||||||| || |||| |||||    
T  42431106 taattgcaaaaacgagcgcttagctttaccaccacctgtcatatgcgtaaactgaaccaaatgatgagttacattatta 42431184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 298
Target Start/End: Complemental strand, 5021101 - 5020930
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||| |||| || ||  ||||||||||||| | |||||   | || |    
T  5021101 cttgaccaccacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatccaacaaccgcgggacgt 5021002  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagatta 298  Q
    | |||| ||||||||||||||| |||||||||||||||||||||| || ||||| ||| ||||  |||||||    
T  5021001 ccgttacaacattattaaacaggcggttattacgttcgttccacacaatccaagtacatagaatccagatta 5020930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 26078924 - 26078780
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||  |||||||||||||  | ||   |||||||||||||| ||||||| | | ||    
T  26078924 cttgaccaccacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataacagtttaatcttatcaaacaacctagggatat 26078825  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccaca 271  Q
    |||||| |||||||||||||| |||||||||| | || |||||||    
T  26078824 cagttacaacattattaaacatacggttattaggatcattccaca 26078780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 26102711 - 26102567
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||  |||||||||||||  | ||   |||||||||||||| ||||||| | | ||    
T  26102711 cttgaccaccacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataacagtttaatcttatcaaacaacctagggatat 26102612  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccaca 271  Q
    |||||| |||||||||||||| |||||||||| | || |||||||    
T  26102611 cagttacaacattattaaacatacggttattaggatcattccaca 26102567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 363
Target Start/End: Complemental strand, 37724415 - 37724178
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatg-gcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtaca 225  Q
    |||||||||||| ||||||||||| ||||||||||| | |||||||||  |||||||| |||| || ||  ||||||||||||| | ||||||  ||||     
T  37724415 cttgaccaccacatctgagtaccataaacaaacatgagtttttttagctttcagccaccctaatgataacaatttaatcttatccaacaacctgggtacg 37724316  T
Q  226 tcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttac 325  Q
    || |||| ||||||| ||||||   ||||||||||||||||||||| || | ||| ||| ||||  || ||||  ||||  || ||||  ||||||||||    
T  37724315 tccgttacaacattactaaacaagtggttattacgttcgttccacacaatcaaagtacacagaatccaaattagctgcagaaaagaacgtttaactttac 37724216  T
Q  326 caacacctgccatatgaataaactgcaccaaatgatca 363  Q
    ||||||||| ||  | | |||||||||| |||||||||    
T  37724215 caacacctgtcaagtaagtaaactgcactaaatgatca 37724178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 31026061 - 31025940
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||||||| |||||||| ||||||||||| || |||||||||||| ||||||| |||||||||||  |||| ||||||||  |||||||| |||| || |    
T  31026061 ggtggttagccaatgcccaaacaagccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 31025962  T
Q  194 aagatttaatcttatcaagcaa 215  Q
    |  | ||||| |||||||||||    
T  31025961 acaacttaatattatcaagcaa 31025940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 8771155 - 8771280
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| |||||||| |||||||||||||||||||| |  || || || |  ||||||||||| |  ||  |||||||||||||||||    
T  8771155 attattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacagccaaataagctgcaagaacgatctttttgctttaccaacacctgcc 8771254  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||||||||||| ||||||    
T  8771255 aaatgagtaaactgcaccagatgatc 8771280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 361
Target Start/End: Complemental strand, 34458577 - 34458453
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| ||||||||  ||||||||||||||| ||| | ||| || || | ||| |||||||| |  |||  ||||||||||||||||    
T  34458577 attattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagttgtaagaacgatcttttagttttaccaacacctgcc 34458478  T
Q  337 atatgaataaactgcaccaaatgat 361  Q
    | |||| |||||||||||| |||||    
T  34458477 aaatgagtaaactgcaccagatgat 34458453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 19728065 - 19728218
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||| ||| |||| ||| |||||| |||  || |||||||||||| ||||||| |||||||||||  |||| ||||||||  ||||||||||||| || |    
T  19728065 ggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagata 19728164  T
Q  194 aagatttaatcttatcaagcaacctatgtacatcagttataacattattaaaca 247  Q
    |  | ||||| |||||||| || ||| | || ||||| || ||||| |||||||    
T  19728165 acaacttaattttatcaagtaatctaggaacctcagtaatcacatttttaaaca 19728218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 13439777 - 13439841
Alignment:
Q  240 attaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  13439777 attaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 13439841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 41801176 - 41801300
Alignment:
Q  238 ttattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcca 337  Q
    ||||| || |||||||| ||||||||  ||||||||||||||| ||| | ||| || || |  || |||||||| |  |||  |||||||||||||||||    
T  41801176 ttattgaaaagacggttgttacgttcactccacaaaacccaagaacacaaaagccaaataagctgtaagaacgatcttttagttttaccaacacctgcca 41801275  T
Q  338 tatgaataaactgcaccaaatgatc 362  Q
     |||| |||||||||||| ||||||    
T  41801276 aatgagtaaactgcaccagatgatc 41801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 15654133 - 15654071
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| ||| || |||||||||||    
T  15654133 agttattacattattaaacagacgattatttcgttcattccacacaactcatgcacaaagaag 15654071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 362
Target Start/End: Complemental strand, 38780677 - 38780544
Alignment:
Q  229 gttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaa 328  Q
    |||| ||||||||| ||||||||| | |||||||||||||| | || ||| ||||| ||||| || ||||  | |  ||||||||| ||| |||||||||    
T  38780677 gttacaacattattgaacagacggatgttacgttcgttccaaacaatccatgcacacagaagccaaattagctacttgaacgaacatttagctttaccaa 38780578  T
Q  329 cacctgccatatgaataaactgcaccaaatgatc 362  Q
    |||||  |||||   |||||  ||||||||||||    
T  38780577 cacctctcatatatgtaaaccacaccaaatgatc 38780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 42565416 - 42565573
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
    |||||||| |||||||| || || | |||||||||| | ||||| |||||||||||  |||| ||||||||  | |||||| |||| || ||  | ||||    
T  42565416 ccaatgcccaaacaagctaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaacttaa 42565515  T
Q  203 tcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
    | ||||||||||| ||| |  | || |||| |||||| ||||||| ||| ||||||||    
T  42565516 ttttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattattacg 42565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 28327074 - 28327130
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||| ||||||||  |||||||||||||| ||||| | ||||||||||||||||||    
T  28327074 aacatgattaaacattcggttattacgttcattccaaacaacccaagcacaaagaag 28327130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 38780808 - 38780744
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatg 162  Q
    |||| |||||||| |||||| | || ||| || |||||||||| |||||||||||||||||||||    
T  38780808 gttacccaatgcccaaacaatctaaagggtttaaccaccacctatgagtaccaaaaacaaacatg 38780744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 5326359 - 5326417
Alignment:
Q  104 caatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatg 162  Q
    ||||||| |||||||| || ||||||||||||||| | || || |||||||||||||||    
T  5326359 caatgcccaaacaagctaaagggcttgaccaccacatatgtgtgccaaaaacaaacatg 5326417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 43571736 - 43571926
Alignment:
Q  99 ttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagat 198  Q
    |||||||||||||| |||   ||| || || ||||||||| ||||||||||||||||||||| |  |||||| ||  | ||||||  ||| || ||  ||    
T  43571736 ttaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccaaaaacaaacacgtttttttttgctttaagccaccgtaacgataacaat 43571835  T
Q  199 ttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaa 289  Q
    |||| |||||| |  |||||  | || |  |||| |||||||  |||||  |||||||||||||||||||||| || ||||| ||| ||||    
T  43571836 ttaaccttatccaataaccttgggacgttcgttacaacattaccaaacaagcggttattacgttcgttccacacaatccaagtacacagaa 43571926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 46623416 - 46623478
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| || ||||  ||||| |||||||||||    
T  46623416 agttattacattattaaacagacgattatttcgttcatttcacacgacccatgcacaaagaag 46623478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 47106172 - 47106006
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||| ||| |||||||| |||||||| || || | |||||||||| | ||||| |||||||||||  |||| ||||||||  | || ||| |||| || |    
T  47106172 ggtgattatccaatgcccaaacaagctaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagtcacactaacgata 47106073  T
Q  194 aagatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
    |  |||| || ||||||||||| ||| |  | || |||| |||||| ||||||| ||| ||||||||    
T  47106072 acaatttgattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattattacg 47106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 6909659 - 6909744
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatc 209  Q
    |||||||||||||||||||| |||||  |||||||||  || ||||||||  || ||||| |||| |||||  |||| ||||||||    
T  6909659 gggcttgaccaccacctctgcgtaccgtaaacaaacacagcctttttagctttcggccaccctaaagacaacaatttgatcttatc 6909744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 260
Target Start/End: Complemental strand, 13554735 - 13554574
Alignment:
Q  99 ttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagat 198  Q
    |||||||||||| |||||| | || || | |||||||||| | ||||| |||||||||||  |||| ||||||||  | |||||| |||| || ||  |     
T  13554735 ttaaccaatgcccaaacaaactaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaac 13554636  T
Q  199 ttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
    ||||| ||||||||||| ||| |  | || |||| |||||| ||||||| ||| || |||||    
T  13554635 ttaattttatcaagcaaactaggagcctcggttacaacatttttaaacaaacgattgttacg 13554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 43022021 - 43021936
Alignment:
Q  134 accacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaaccta 219  Q
    ||||| ||||||| |||||||||||  |||| |||||| || ||||||||||||| || ||  | ||||| |||||||| ||||||    
T  43022021 accacatctgagttccaaaaacaaaagtggcatttttaaccttcagccacgctaaagataacaacttaattttatcaagtaaccta 43021936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 9975444 - 9975500
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccac 183  Q
    ||||||||||||||||| ||| |||||||||||||| | ||| ||||  ||||||||    
T  9975444 cttgaccaccacctctgtgtatcaaaaacaaacatgacatttctagctttcagccac 9975500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 15747425 - 15747389
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    |||||||||||||||||||| |||||| |||||||||    
T  15747425 gggcttgaccaccacctctgcgtaccataaacaaaca 15747389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 29113977 - 29113921
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcaca 284  Q
    ||||| ||||||||| || || | |||||||||||||||||| ||||||||| ||||    
T  29113977 agttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacaca 29113921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 34344305 - 34344337
Alignment:
Q  10 tcccaagcacaaggtatgcctagaagaccacta 42  Q
    ||||||||||||||| |||||||||||||||||    
T  34344305 tcccaagcacaaggtgtgcctagaagaccacta 34344337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 34344410 - 34344446
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    |||||||||||||||||||| |||||| |||||||||    
T  34344410 gggcttgaccaccacctctgcgtaccataaacaaaca 34344446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 375
Target Start/End: Complemental strand, 44415646 - 44415281
Alignment:
Q  3 tagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaacagagtcaaaacctaacagagaactgaaaacaaatacaaggtggttaa 102  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||| ||  | |  | | |||| ||||   ||||||| ||   ||| ||||     
T  44415646 tagtagctcccaagcacaaggtgtgcctagaaacccactacaacaatacaaagagtcttagtagc-aacaaagaa---aaaacaacta---ggttgttag 44415554  T
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
     ||||||||||||| ||||| ||| |||||||||||||||||| |||| |||||||||| |||||||||||| | ||||| ||||| |||||| ||||||    
T  44415553 tcaatgcctaaacacgccaaagggtttgaccaccacctctgagcaccacaaacaaacatagcttttttagccataagccatgctaaagacaaatatttaa 44415454  T
Q  203 tcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattg 302  Q
    |||||||||||||||| |  ||||  |||||||||||||| |||||  ||||||| |||||||||||||||||||||| ||| || || |||||||||||    
T  44415453 tcttatcaagcaacctgtagacattcgttataacattattgaacaggtggttattgcgttcgttccacaaaacccaagtacataggagccagattaattg 44415354  T
Q  303 caagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatcagctacagtatta 375  Q
     |  ||||||| |||| |||||||||||||||  |||| | |||| || |||| ||||||||| ||| |||||    
T  44415353 tagaaacgaacgcttagctttaccaacacctgttatataagtaaattgtaccagatgatcagcaacattatta 44415281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 115 - 375
Target Start/End: Original strand, 44929835 - 44930094
Alignment:
Q  115 caagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagca 214  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||| ||||| ||||  |||||||| |||| || || || |||||||| || ||||    
T  44929835 caagccaaaggacttgaccaccacatctgagtaccaaaaacaaacatgacttttatagctttcagccacactaaagataacgacttaatcttttctagca 44929934  T
Q  215 acctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaaca 314  Q
    ||||  | ||||| |||| || ||||||||||| |||||| || |||||||||||||||||| ||| |||||| || || |||| ||| |  |||||||     
T  44929935 acctgag-acatcggttacaatattattaaacatacggttgttgcgttcgttccacaaaaccaaagtacaaaggagccaaattagttgtagaaacgaacg 44930033  T
Q  315 cttaactttaccaacacctgccatatgaataaactgcaccaaatgatcagctacagtatta 375  Q
    |||| ||||||||||||||| ||||| | ||||||||| ||||||||| || ||| |||||    
T  44930034 cttagctttaccaacacctgtcatataagtaaactgcatcaaatgatctgcaacattatta 44930094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 127 - 364
Target Start/End: Complemental strand, 16874021 - 16873784
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    |||||||||||| | ||||||||| ||| ||||||||||||||||||  |||||||| |||| || ||  ||||||| ||||| |||||| |  | || |    
T  16874021 cttgaccaccacatatgagtaccataaataaacatggcttttttagctttcagccaccctaatgataacaatttaattttatccagcaacttcgggacgt 16873922  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttacc 326  Q
    | |||| ||||||||||||||| |||||||||||||||||||||| || ||||| ||| ||||  |||||||  ||  | || ||||| ||| |||||||    
T  16873921 ccgttacaacattattaaacaggcggttattacgttcgttccacacaatccaagtacatagaatccagattagctgttaaaaggaacatttagctttacc 16873822  T
Q  327 aacacctgccatatgaataaactgcaccaaatgatcag 364  Q
    ||||||||||| || | |||||||||||||||||||||    
T  16873821 aacacctgccaaataagtaaactgcaccaaatgatcag 16873784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 361
Target Start/End: Complemental strand, 34854169 - 34853935
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||  |||||||| |||  || ||  |||||| |||||| | ||  | | | ||      
T  34854169 cttgaccaccacctctacgtaccaaaaacaaacatggcctttttagctttcagccaccctagagataacaatttaaccttatctaacaggcgagggacta 34854070  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttacc 326  Q
      ||||||  |||||| || | |||||| |||||||| ||||||| |||||||| |||||  ||||| ||||  |||| ||||||||  ||| |||||||    
T  34854069 tggttatagtattattgaataaacggttgttacgttcattccacacaacccaagaacaaaatagtcaaattagctgcatgaacgaacgtttagctttacc 34853970  T
Q  327 aacacctgccatatgaataaactgcaccaaatgat 361  Q
    |||||||| |||||   ||||||||||||||||||    
T  34853969 aacacctgtcatatctgtaaactgcaccaaatgat 34853935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 36928879 - 36928938
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaag 287  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||    
T  36928879 agttataacattattaaacagacgattatttcgttcattccacacaacccaagcacaaag 36928938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 32353719 - 32353649
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  32353719 aacataattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 32353649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 39730358 - 39730280
Alignment:
Q  95 gtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagc 173  Q
    ||||||| ||||| |||||||| |  | ||| |||||||||||| ||||||||||| |||||||||||| |||||||||    
T  39730358 gtggttagccaattcctaaacatgttatgggacttgaccaccacatctgagtaccataaacaaacatggtttttttagc 39730280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 48073848 - 48073784
Alignment:
Q  240 attaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  48073848 attaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 48073784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 14366053 - 14365991
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| || || ||||||| |||||||||||| |||||    
T  14366053 agttattacattattaaacagacgattatttcgctcattccacacaacccaagcacagagaag 14365991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 41503458 - 41503384
Alignment:
Q  99 ttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagc 173  Q
    |||||||||||| |||||| |||  || |||||||||||| ||||||| |||||||||||  |||||| ||||||    
T  41503458 ttaaccaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcttgtttagc 41503384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 360
Target Start/End: Complemental strand, 30970997 - 30970904
Alignment:
Q  267 ccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatga 360  Q
    ||||| ||||||||||||||| || ||||| | ||||| ||| ||||| ||| |||||||  |||||||||||||| | ||||| | |||||||    
T  30970997 ccacacaacccaagcacaaaggagccagatgagttgcatgaaagaacatttagctttaccgccacctgccatatgagtgaactgaaacaaatga 30970904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 47116000 - 47116076
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    |||||| ||||||||||||||||| |||||  |||| ||||||| ||| || ||||||| |||||| || |||||||    
T  47116000 agttattacattattaaacagacgattattttgttcattccacacaactcaggcacaaaaaagtcatataaattgca 47116076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 36305496 - 36305555
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaag 287  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| ||||||  |||||||    
T  36305496 agttattacattattaaacagacgattatttcgttcattccacacaacccagacacaaag 36305555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 4644725 - 4644787
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||| | ||||| ||||| ||||||| |||||| ||||| |||||    
T  4644725 agttattacattattaaacagatgattatttcgttcattccacacaacccaggcacagagaag 4644787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 38231405 - 38231475
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||| ||||||||||||||| ||||| | ||| || ||||| |||||||| |||| |||||    
T  38231405 aacatgattaaacatacggttattacgttcattccaaacaactcaggcacatagaagtcatattagttgca 38231475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 49969039 - 49969095
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcaca 284  Q
    ||||| |||||||||||| || | |||||||||||||||||| ||||| ||| ||||    
T  49969039 agttacaacattattaaaaagtctgttattacgttcgttccataaaactcaaacaca 49969095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 22540155 - 22540368
Alignment:
Q  1 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaacagagtcaaaacctaa-cagagaactgaaaacaaatacaaggtggt 99  Q
    |||||||||||||||| | ||| | ||||||||||||||||| ||||||||||  |||||| |||||||| || |  | ||||||| || |||| |||||    
T  22540155 aatagtagctcccaagtataagatgtgcctagaagaccactagaacaatacaacaagagtccaaacctaaacaaatgattgaaaacgaacacaacgtggt 22540254  T
Q  100 taaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatt 199  Q
    || |||||||||||||||| ||| |||||| |||||||| ||||| ||||||||||||| || ||||||||||||||||| ||| |||||||||||||||    
T  22540255 tagccaatgcctaaacaagtcaaagggcttaaccaccacttctgaataccaaaaacaaatatagcttttttagccgtcagtcacactaaggacaaagatt 22540354  T
Q  200 taatcttatcaagc 213  Q
    ||||||||||||||    
T  22540355 taatcttatcaagc 22540368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 289
Target Start/End: Original strand, 20669097 - 20669259
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |||| || ||  ||||||||||||| | ||||||  | || |    
T  20669097 cttgaccaccacatctgagtaccataaacaaacatggcttttttagccttcatccaccctaatgataacaatttaatcttatccaacaacctcgggacgt 20669196  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaa 289  Q
    | |||| ||||||||||||||| |||||||||||||||||||||| || ||||| ||| ||||    
T  20669197 ccgttacaacattattaaacaggcggttattacgttcgttccacacaatccaagtacacagaa 20669259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 280
Target Start/End: Complemental strand, 4525188 - 4525003
Alignment:
Q  95 gtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaa 194  Q
    ||||||| |||||||| | ||||||||  || |||||||||||| ||| |||| ||||||||||  |||||||||||||  |||| |||||||| || ||    
T  4525188 gtggttagccaatgcccagacaagccataggacttgaccaccacgtcttagtatcaaaaacaaaagtggcttttttagctttcagtcacgctaaagataa 4525089  T
Q  195 agatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaag 280  Q
      ||||||||||||||||||| ||| | || ||| ||| ||||||||||||||| |||||||| | |||||||||||  |||||||    
T  4525088 caatttaatcttatcaagcaatctagggacctcaattacaacattattaaacagtcggttattgcattcgttccacatcacccaag 4525003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 46639409 - 46639284
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| |||||||| |||||||||||||||||||| |  || || || |  ||||||||||| |  ||  |||||||||||||||||    
T  46639409 attattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacagccaaataagctgcaagaacgatctttttgctttaccaacacctgcc 46639310  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||||||||||| ||||||    
T  46639309 aaatgagtaaactgcaccagatgatc 46639284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 26693649 - 26693773
Alignment:
Q  238 ttattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcca 337  Q
    ||||| || |||||||| ||||||||  ||||||||||||| | ||| | ||| || || |  || |||||||| |  ||| ||||||||||||||||||    
T  26693649 ttattgaaaagacggttgttacgttcactccacaaaacccacgaacacaaaagccaaataagctgtaagaacgatcttttagctttaccaacacctgcca 26693748  T
Q  338 tatgaataaactgcaccaaatgatc 362  Q
     ||||||||||||||||| ||||||    
T  26693749 aatgaataaactgcaccagatgatc 26693773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 7663666 - 7663604
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||    
T  7663666 agttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaag 7663604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 23873898 - 23873828
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  23873898 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 23873828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 55298341 - 55298411
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  55298341 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 55298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 53809562 - 53809687
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| |||||||||||  ||||||| ||||||| |||||||| ||| |  || || || | ||||| |||||| |  |||||||||||| |||||| |    
T  53809562 attattgaacagacggttgatacgttcattccacacaacccaagtacacaatagccaaataagttgcatgaacgagcgtttaactttaccaccacctgtc 53809661  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    ||||   |||||||||||||||||||    
T  53809662 atatacgtaaactgcaccaaatgatc 53809687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 359
Target Start/End: Complemental strand, 4641096 - 4640975
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacct 333  Q
    ||||||||| ||||||||||| ||||||||    || | |||||||| ||| | ||| || ||||  |||||||| || |  ||| ||||||||||||||    
T  4641096 aacattattgaacagacggttgttacgttc----cagacaacccaagtacacataagccaaattagctgcaagaatgatcgtttatctttaccaacacct 4641001  T
Q  334 gccatatgaataaactgcaccaaatg 359  Q
    | ||||||| ||||||||||||||||    
T  4641000 gtcatatgagtaaactgcaccaaatg 4640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 23279325 - 23279381
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||  ||||||||||    
T  23279325 aacattattaaacagacgattatttcgttcgttccacacaacccacacacaaagaag 23279381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 3130407 - 3130345
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| |||||  |||| ||||||| |||||| |||||||||||    
T  3130407 agttattacattattaaacagacgattattttgttcattccacacaacccaggcacaaagaag 3130345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 37615147 - 37615313
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||||||| |||||||| | |||| |||| || |||||||||||| ||||||| |||||||||||  |||| |||||| |  |||||| | |||| || |    
T  37615147 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttaactttcagccgcactaacgata 37615246  T
Q  194 aagatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
    |  | ||||| ||||||||||| ||| |  | || |||| |||||| ||||||| ||| || |||||    
T  37615247 acaacttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacg 37615313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 42169563 - 42169513
Alignment:
Q  112 aaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatg 162  Q
    |||||||| || |||||||||||||||||||| || |||||||||||||||    
T  42169563 aaacaagctaaagggcttgaccaccacctctgcgtgccaaaaacaaacatg 42169513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 47540637 - 47540699
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||| ||||| |||||    
T  47540637 agttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaag 47540699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 10353526 - 10353590
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaa 158  Q
    |||||||| |||||||| |||||| |||| || |||||||||||| ||||||| || ||||||||    
T  10353526 ggtggttagccaatgcccaaacaaaccaaaggacttgaccaccacatctgagttccgaaaacaaa 10353590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 1121072 - 1121013
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaag 287  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| || ||| ||||||||    
T  1121072 agttattacattattaaacagacgattatttcgttcattccacacaatccaggcacaaag 1121013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 42954055 - 42953880
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||| ||| |||| ||| |||||| |||  || |||||||||||| | ||||| |||||||||||  |||| |||||| |  ||||||||||||| || |    
T  42954055 ggtgattagccaaagcccaaacaaaccataggacttgaccaccacatttgagttccaaaaacaaaagtggcatttttatctttcagccacgctaaagata 42953956  T
Q  194 aagatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttcca 269  Q
    |  | ||||| |||||||| || ||| | || || || || ||||| ||||||| ||| |||||||| || |||||    
T  42953955 acaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacatacgattattacgctcattcca 42953880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 8655599 - 8655535
Alignment:
Q  130 gaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaa 194  Q
    |||||||||  |||||||||||| |||||  | |||||||||||| ||| ||| |||||||||||    
T  8655599 gaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaa 8655535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 358
Target Start/End: Complemental strand, 19824324 - 19824093
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||  |||||||| |||| || |   ||||||||||||| | ||||||  | ||||    
T  19824324 cttgaccaccacatctgagtatcataaacaaacatggcttttttagctttcagccaccctaatgatatcaatttaatcttatccaacaacctcgggacat 19824225  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttacc 326  Q
    | |||| ||||||||||||||| |||||||||||||||||||||| || ||||| ||| |||| |||||||| ||| || || ||||  ||| |||||||    
T  19824224 ccgttacaacattattaaacaggcggttattacgttcgttccacacaatccaagtacatagaattcagattagttgtaaaaaggaacgtttagctttacc 19824125  T
Q  327 aacacctgccatatgaataaactgcaccaaat 358  Q
    |||||||| || || | |||||||||||||||    
T  19824124 aacacctgtcaaataagtaaactgcaccaaat 19824093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 98 - 364
Target Start/End: Complemental strand, 9163687 - 9163421
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaaga 197  Q
    |||| ||||| |||||||| |  || || |||||||||||| ||||||||||| |||||||||||| |||||||||  |||||||| |||| || ||  |    
T  9163687 gttagccaattcctaaacatgttaaaggacttgaccaccacatctgagtaccataaacaaacatggtttttttagctttcagccaccctaaagataacaa 9163588  T
Q  198 tttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagatt 297  Q
    |||||||||||| | ||||||  | ||||| |||| ||||||||||||||| |||||||||||||| ||||||| || ||||| ||||||||  ||||||    
T  9163587 tttaatcttatccaacaacctcgggacatccgttacaacattattaaacaggcggttattacgttcattccacacaatccaagtacaaagaatccagatt 9163488  T
Q  298 aattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgatcag 364  Q
    |  || |  || | ||  ||| |||||||||||||||||| || | |||||||||||||||||||||    
T  9163487 agctgtagaaaggcacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcag 9163421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 339
Target Start/End: Complemental strand, 54440673 - 54440430
Alignment:
Q  96 tggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaa 195  Q
    |||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||| |||| |||||||||||| |  ||| |||| |||| || ||     
T  54440673 tggttagccaatgcccaaacaagccaaaggacttgaccaccacctatgagtaccaaaatcaaatatggcttttttacctttcatccacactaacgataac 54440574  T
Q  196 gatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcaga 295  Q
     |||| ||||||||||| |||||| | |||||||| | ||||||||||||||| || || || |||||||||||| | |||||||  |||||||| || |    
T  54440573 aatttgatcttatcaagtaacctaggaacatcagtaacaacattattaaacagtcgattgttgcgttcgttccacgacacccaagtgcaaagaagccaaa 54440474  T
Q  296 ttaattgcaagaacgaacacttaactttaccaacacctgccata 339  Q
    |||| || |  ||||| | |||| |||| |||||||||| ||||    
T  54440473 ttaactgaagaaacgacctcttagctttgccaacacctgtcata 54440430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 45683897 - 45684022
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| |||||||| |||||||||||||||||||| |  || || || |  ||||||||||| |  ||  |||||||||||||||||    
T  45683897 attattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacagccaaataagctgcaagaacgatctttttgctttaccaacacctgcc 45683996  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||||||||||| ||||||    
T  45683997 aaatgagtaaactgcaccagatgatc 45684022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 10867287 - 10867453
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
    |||||||| | |||||||| | | |||||||||||| ||||||| |||||||||||  |||  ||||||||  ||||||||||||| || ||  | ||||    
T  10867287 ccaatgcccagacaagccatgagacttgaccaccacatctgagttccaaaaacaaaagtggtatttttagctttcagccacgctaacgataacaacttaa 10867386  T
Q  203 tcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttcca 269  Q
    | ||||||||||| ||| |  | ||| ||| |||||| |||| || |||||| ||||| || |||||    
T  10867387 ttttatcaagcaatctaggagcctcaattacaacatttttaagcaaacggttgttacgctcattcca 10867453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 20822897 - 20822791
Alignment:
Q  256 ttacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcacca 355  Q
    ||||||||  ||||||||||||||||||  | ||| ||||| |  ||||||||||| |  ||  |||||||||||||||||| |||| ||||||||||||    
T  20822897 ttacgttcactccacaaaacccaagcactcaaaagccagataagctgcaagaacgatctttttgctttaccaacacctgccaaatgagtaaactgcacca 20822798  T
Q  356 aatgatc 362  Q
     ||||||    
T  20822797 gatgatc 20822791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 23601491 - 23601561
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  23601491 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 23601561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 27497340 - 27497434
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaa 188  Q
    |||||||| |||||| | ||||||||||| || |||||||||||| ||||| | |||||||||||  |||| ||||||||  |||||||| ||||    
T  27497340 ggtggttagccaatgtccaaacaagccaaaggacttgaccaccacatctgaattccaaaaacaaaagtggcatttttagctttcagccacactaa 27497434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 30167773 - 30167711
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||    
T  30167773 agttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaag 30167711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 361
Target Start/End: Complemental strand, 9319554 - 9319430
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| |||| |||||| ||||||||  |||||| |||||||| ||| | ||| || || ||||||| |||||| |  ||||| |||||  |||||| |    
T  9319554 attattgaacaaacggttgttacgttcactccacacaacccaagtacacaaaagccaaataaattgcatgaacgagcgtttaacattaccgccacctgtc 9319455  T
Q  337 atatgaataaactgcaccaaatgat 361  Q
    |||||||||||||||| || |||||    
T  9319454 atatgaataaactgcagcagatgat 9319430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 27969111 - 27969165
Alignment:
Q  226 tcagttataacattattaaacagacggttattacgttcgttccacaaaacccaag 280  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||||  |||||||    
T  27969111 tcagttacaacattattaaacaaacgattattacgttcgttccacatcacccaag 27969165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 36708467 - 36708529
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    |||| |||||||| |||||||| || |||||||||||||| ||||| |||||| |||||||||    
T  36708467 gttagccaatgcccaaacaagctaaagggcttgaccaccatctctgcgtaccataaacaaaca 36708529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 9319677 - 9319608
Alignment:
Q  114 acaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccac 183  Q
    |||||| || |||| |||||||||||||||||| ||| | ||||||||| | ||||||||| ||||||||    
T  9319677 acaagctaaagggcatgaccaccacctctgagtgccatacacaaacatgacatttttagccttcagccac 9319608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 20198647 - 20198491
Alignment:
Q  104 caatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaat 203  Q
    ||||||| |||||||||||  | |||||||||||| ||||||| |||||||||||  ||   ||||||||  |||||||| |||| || ||  | |||||    
T  20198647 caatgcccaaacaagccaaaagacttgaccaccacatctgagttccaaaaacaaaagtgatatttttagctttcagccacactaacgataacaacttaat 20198548  T
Q  204 cttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
     ||||||||||| ||| |  | || |||| |||||| ||||||| ||| || |||||    
T  20198547 tttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacg 20198491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 38926392 - 38926456
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaa 188  Q
    |||||||||||||||||||| |||||| |||||||||| || |||||| |  |||||||| ||||    
T  38926392 gggcttgaccaccacctctgcgtaccataaacaaacatagcctttttaactttcagccaccctaa 38926456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 362
Target Start/End: Complemental strand, 42675856 - 42675732
Alignment:
Q  238 ttattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcca 337  Q
    ||||| || |||||||| ||||||||  ||||||||| ||| | ||| | ||| || || |  || |||||||| |  ||| ||||||||||||||||||    
T  42675856 ttattgaaaagacggttgttacgttcactccacaaaatccacgaacacaaaagccaaataagctgtaagaacgatcttttagctttaccaacacctgcca 42675757  T
Q  338 tatgaataaactgcaccaaatgatc 362  Q
     |||| |||||||||||| ||||||    
T  42675756 aatgagtaaactgcaccagatgatc 42675732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 2813922 - 2813843
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaac 313  Q
    ||||| |||||||| ||||||||||||||| ||||| |  ||||| ||||| |||||||| |||| |||||  |||||||    
T  2813922 aacatgattaaacatacggttattacgttcattccagactacccaggcacatagaagtcatattagttgcataaacgaac 2813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 26009624 - 26009687
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacat 161  Q
    |||| |||||||| |||||||| || ||| |||||||||||||| | || ||||||||||||||    
T  26009624 gttagccaatgcccaaacaagctaaagggtttgaccaccacctcggcgtgccaaaaacaaacat 26009687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 13448190 - 13448252
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| ||| || ||||| |||||    
T  13448190 agttattacattattaaacagacgattatttcgttcattccacacaactcaggcacagagaag 13448252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 14868347 - 14868253
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaa 188  Q
    |||| ||| |||| ||| |||||| |||  || |||||||||||| ||||||| |||||||||||  |||| ||||||||  ||||||| |||||    
T  14868347 ggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccaagctaa 14868253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 49732361 - 49732299
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| || |||||||||| |||||  ||||| |||||    
T  49732361 agttattacattattaaacagacgattatttcgctcgttccacacaacccgggcacagagaag 49732299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 27968818 - 27968891
Alignment:
Q  95 gtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggctttt 168  Q
    ||||||| | |||||| | ||||||||  || |||||||||||| ||||||| |||||||||||  ||||||||    
T  27968818 gtggttagcaaatgcccagacaagccagaggacttgaccaccacatctgagtgccaaaaacaaaagtggctttt 27968891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 36708602 - 36708727
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| ||||| ||||| |||||||| |||||||  ||||||| ||| | ||| || || | ||||| ||||||||  ||  |||||||||||| ||||    
T  36708602 attattgaacagtcggttgttacgttcattccacactacccaagaacacaaaagccaaataagttgcatgaacgaactttttgctttaccaacacatgcc 36708701  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||| ||||| | ||||||    
T  36708702 aaatgagtaaattgcactagatgatc 36708727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 7146759 - 7146815
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||| ||||||||  |||||||||||||| ||||| | |||||| |||||||||||    
T  7146759 aacatgattaaacatccggttattacgttcattccaaacaacccaggcacaaagaag 7146815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 47536980 - 47537036
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcaca 284  Q
    ||||| ||||||||| || || | |||||||||||||||||| ||||||||| ||||    
T  47536980 agttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacaca 47537036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 53946462 - 53946398
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaa 158  Q
    |||||||| |||||||| |||||| |||| ||  ||||||||||| ||||||| || ||||||||    
T  53946462 ggtggttagccaatgcccaaacaaaccaaaggatttgaccaccacatctgagttcctaaaacaaa 53946398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 349
Target Start/End: Complemental strand, 4040601 - 4040354
Alignment:
Q  102 accaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagattta 201  Q
    ||||||||||| ||||| ||| || |||||||||||||| | |||||||||||||||  |||||||||||||  ||||||||||||| || ||   ||||    
T  4040601 accaatgcctacacaagtcaaaggacttgaccaccacctatcagtaccaaaaacaaatgtggcttttttagctttcagccacgctaacgataacagttta 4040502  T
Q  202 atcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaatt 301  Q
    ||||||||||| |||||| | ||||| |||| ||||||||||||||| | ||| |||||||||||||| || ||||| | ||| || || |||||||| |    
T  4040501 atcttatcaagtaacctaggaacatcggttacaacattattaaacagtcagttgttacgttcgttccataacacccatgtacatagtagccagattaact 4040402  T
Q  302 gcaagaacgaacacttaactttaccaacacctgccatatgaataaact 349  Q
    | || ||||||||| || |||| ||||||| || ||||| | ||||||    
T  4040401 gtaaaaacgaacacctagctttgccaacacttgtcatataagtaaact 4040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 26490806 - 26490664
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
    ||||| || ||||||||||| ||||||||| ||||| ||||||||||||| ||||||||| ||||||||||  ||||||| || || || ||  ||||||    
T  26490806 ccaatacccaaacaagccaaagggcttgactaccacttctgagtaccaaatacaaacatgacttttttagctttcagccatgccaaagataacaatttaa 26490707  T
Q  203 tcttatcaagcaacctatgtacatcagttataacattattaaa 245  Q
    ||||||||||||||||  |   |||||||| ||||||||||||    
T  26490706 tcttatcaagcaacctgggagtatcagttacaacattattaaa 26490664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 361
Target Start/End: Complemental strand, 8066785 - 8066521
Alignment:
Q  97 ggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaag 196  Q
    ||||| |||||||||| |||| | || |||||||||||||||||||| ||||||||||||||||| |  |||||| |  |||||||| |||| || ||      
T  8066785 ggttagccaatgcctagacaatctaacgggcttgaccaccacctctgcgtaccaaaaacaaacattgtctttttaactttcagccaccctaaagataaca 8066686  T
Q  197 atttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagat 296  Q
    |||| | |||||| | |||   | |  ||  ||| | |  |||||| |||| |||||| |||||||| ||||| | |||||||| ||| | |||||| ||    
T  8066685 atttgaccttatctaacaagtgaggagcagtagtaacagtattattgaacaaacggttgttacgttcattccatataacccaagaacacaaaagtcaaat 8066586  T
Q  297 taattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgat 361  Q
     |   ||| ||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  8066585 aagccgcatgaatgaacttttaactttaccaacacctgccatatgagtaaactgcaccaaatgat 8066521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 11235026 - 11234860
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||||||| |||||||| |||||| |||| || |||||||||||| ||||||| |||||||||||  |    ||||||||  |||||||| |||| || |    
T  11235026 ggtggttagccaatgcccaaacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagttatatttttagctttcagccacactaacgata 11234927  T
Q  194 aagatttaatcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacg 260  Q
    |  | ||||| ||||||||||| ||| |  | ||||||| |||||| ||||||| ||| ||||||||    
T  11234926 acaacttaattttatcaagcaatctaggagcctcagttacaacatttttaaacaaacgattattacg 11234860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 3119545 - 3119666
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||||||| |||||||| |||||||||||  | |||||||||||| ||||||| |||||||||||  |||| ||||||||  || ||||| |||| || |    
T  3119545 ggtggttagccaatgcccaaacaagccaaatgacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttccgccacactaacgata 3119644  T
Q  194 aagatttaatcttatcaagcaa 215  Q
    |  | ||||| |||||||||||    
T  3119645 acaacttaattttatcaagcaa 3119666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 28400969 - 28400844
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| |||||||| |||||||||||||||||||| |  |  || || |  ||||||||||| |  ||  |||||||||||||||||    
T  28400969 attattgaaaagacggttgttacgttcattccacaaaacccaagcacacaacaaccaaataagctgcaagaacgatctttttgctttaccaacacctgcc 28400870  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||||||||||| ||||||    
T  28400869 aaatgagtaaactgcaccagatgatc 28400844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 33547590 - 33547660
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||| ||||||| |||||    
T  33547590 aacatgattaaacatacggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgca 33547660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 45421230 - 45421292
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||    
T  45421230 agttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaag 45421292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 13549842 - 13549898
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||| |||||||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  13549842 aacatgattaaacagacggttatttcgttcattccacacaacccaggcacaaagaag 13549898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 32244155 - 32244043
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
    |||||||| | ||||||||  || |||||||||||| |||||||  ||||||||||  |||| ||||||||  ||||||||||||| || ||  | ||||    
T  32244155 ccaatgcccagacaagccataggacttgaccaccacatctgagtttcaaaaacaaaagtggcatttttagctttcagccacgctaacgataacaacttaa 32244056  T
Q  203 tcttatcaagcaa 215  Q
    | |||||||||||    
T  32244055 ttttatcaagcaa 32244043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 31774433 - 31774520
Alignment:
Q  265 ttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgca 352  Q
    ||||||| ||| |||||||||||||||||||| | ||||| ||| ||||| ||| |||||||  |||||| ||||||| | |||||||    
T  31774433 ttccacacaactcaagcacaaagaagtcagatgagttgcatgaaagaacatttagctttaccgccacctgtcatatgagtgaactgca 31774520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 37139313 - 37139373
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgcta 187  Q
    |||||||||||| ||||||| ||||||||||| ||| | ||||||||  ||||||||||||    
T  37139313 cttgaccaccacatctgagttccaaaaacaaaaatgacatttttagctttcagccacgcta 37139373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 6267469 - 6267527
Alignment:
Q  99 ttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaa 157  Q
    ||||||||||||||||||| |||   | |||||||||||| ||||||| ||||||||||    
T  6267469 ttaaccaatgcctaaacaaaccatatgacttgaccaccacatctgagttccaaaaacaa 6267527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 37643302 - 37643344
Alignment:
Q  320 ctttaccaacacctgccatatgaataaactgcaccaaatgatc 362  Q
    |||||||||||||||||| |||| |||||||||||| ||||||    
T  37643302 ctttaccaacacctgccaaatgagtaaactgcaccagatgatc 37643344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 9669568 - 9669447
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||| |||||||||||| |||||| | || || | |||||||||| | ||||| |||||||||||  |||| ||||||||  | |||||| |||| || |    
T  9669568 ggtgattaaccaatgcccaaacaaactaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcctttttagctttaagccacactaacgata 9669469  T
Q  194 aagatttaatcttatcaagcaa 215  Q
    |  | ||||| |||||||||||    
T  9669468 acaacttaattttatcaagcaa 9669447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 362
Target Start/End: Original strand, 36803625 - 36803758
Alignment:
Q  229 gttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaa 328  Q
    |||| |||||||||||||||  |||| || ||||||||||| | |||||||| ||  ||||| || || |  |||||||| || | |||| |||||||      
T  36803625 gttacaacattattaaacagttggttgtttcgttcgttccagacaacccaagaactcagaagccaaatcagctgcaagaatgagcgcttagctttacccg 36803724  T
Q  329 cacctgccatatgaataaactgcaccaaatgatc 362  Q
    |||||| ||||| | |||| |||| |||||||||    
T  36803725 cacctgtcatataagtaaattgcaacaaatgatc 36803758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 31594162 - 31594250
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaag 212  Q
    |||||||||||||||  |||||| |||||||||||  | |||||||||||  |||||||  |||| ||||   |||||| |||||||||    
T  31594162 gggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaatttaaccttatcaag 31594250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 36803522 - 36803558
Alignment:
Q  126 gcttgaccaccacctctgagtaccaaaaacaaacatg 162  Q
    |||||||||||||||||| || |||||||||||||||    
T  36803522 gcttgaccaccacctctgcgtgccaaaaacaaacatg 36803558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 43627217 - 43627273
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||| ||||||||  |||||||||||||| ||||| | |||||| |||||||||||    
T  43627217 aacatgattaaacatccggttattacgttcattccaaacaacccaggcacaaagaag 43627273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 127 - 364
Target Start/End: Complemental strand, 35123235 - 35122998
Alignment:
Q  127 cttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacat 226  Q
    |||||||||||| ||| ||||||| |||||||||||||||||| |||  |||||||| |||| || ||  ||||||||||||| | ||||||  | || |    
T  35123235 cttgaccaccacatctaagtaccataaacaaacatggctttttcagctttcagccaccctaatgataacaatttaatcttatccaacaacctcgggacgt 35123136  T
Q  227 cagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttacc 326  Q
    | |||| ||||||||||||||| | |||||||||||||||||||| || ||||| ||| ||||  |||||||  || || || ||||  ||| |||||||    
T  35123135 ccgttacaacattattaaacaggcagttattacgttcgttccacacaatccaagtacatagaatccagattagatgtaaaaaggaacgtttagctttacc 35123036  T
Q  327 aacacctgccatatgaataaactgcaccaaatgatcag 364  Q
    ||||||||||| || | |||||||||||||||||||||    
T  35123035 aacacctgccaaataagtaaactgcaccaaatgatcag 35122998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 19182252 - 19182127
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || |||||||| ||||||||  ||||||||||||||||||| |  || || || ||||||||||| || |  ||  |||||||||||||||||    
T  19182252 attattgaaaagacggttgttacgttcactccacaaaacccaagcacacaacagccaaataaattgcaagaatgatctttttgctttaccaacacctgcc 19182153  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| |||||||||||| ||||||    
T  19182152 aaatgagtaaactgcaccagatgatc 19182127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 8571517 - 8571683
Alignment:
Q  103 ccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaa 202  Q
    |||| ||| |||||| ||| ||| |||||||||||| ||||||| |||||||||||  |||| ||||||||  ||||||||||||| || ||  | ||||    
T  8571517 ccaaagcccaaacaaaccatgggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagataacaacttaa 8571616  T
Q  203 tcttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttcca 269  Q
    | |||||||| || ||| | || || || || ||||| ||||||| ||| |||||||| || |||||    
T  8571617 ttttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgattattacgctcattcca 8571683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 19514027 - 19513902
Alignment:
Q  94 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggaca 193  Q
    |||| ||| |||| ||| |||||| |||  || |||||||||||| ||||||| |||||||||||  |||| ||||||||| ||||||||||||| || |    
T  19514027 ggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagccttcagccacgctaaagata 19513928  T
Q  194 aagatttaatcttatcaagcaaccta 219  Q
    |  | ||||| |||||||| ||||||    
T  19513927 acaacttaattttatcaagtaaccta 19513902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 4399466 - 4399630
Alignment:
Q  105 aatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatc 204  Q
    |||||| |||||| |||  || |||||||||||| ||||||| |||||||||||  |||||||||||||  |||||| |||||| || ||  | |||||     
T  4399466 aatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcttttttagctttcagccgcgctaaagataacaacttaatt 4399565  T
Q  205 ttatcaagcaacctatgtacatcagttataacattattaaacagacggttattacgttcgttcca 269  Q
    |||||||| || ||| | || || || || ||||| ||||||| ||| || ||||| || |||||    
T  4399566 ttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgattgttacgctcattcca 4399630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 10487334 - 10487272
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| || || ||||||| |||||| |||||||||||    
T  10487334 agttattacattattaaacagacgattatttcgctcattccacacaacccaggcacaaagaag 10487272  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 6866237 - 6866297
Alignment:
Q  301 tgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgcaccaaatgat 361  Q
    |||| ||||||||  ||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  6866237 tgcatgaacgaacttttagctttgccaacacctgtcatatgagtaaactgcaccaaatgat 6866297  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 3199679 - 3199600
Alignment:
Q  104 caatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccac 183  Q
    ||||||| |||||| |||  || |||||||||||| ||||||| |||||||||||  |||| ||||||||  ||||||||    
T  3199679 caatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccac 3199600  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 31862330 - 31862440
Alignment:
Q  253 ttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgccatatgaataaactgca 352  Q
    |||||| |||| ||||||||||||||  |||||||||| || |||| ||||| ||| || |   || |||| ||| |||||| ||||||| |||||||||    
T  31862330 ttattatgttcattccacaaaacccagacacaaagaagccatattagttgcatgaaagaccgtctagctttgccaccacctgtcatatgagtaaactgca 31862429  T
Q  353 ccaaatgatca 363  Q
      |||||||||    
T  31862430 ataaatgatca 31862440  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 32918035 - 32918105
Alignment:
Q  234 aacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgca 304  Q
    ||||| |||||||||||||||||| ||||| ||||| | |||||| ||||| ||||| || |||| |||||    
T  32918035 aacatgattaaacagacggttatttcgttcattccaaacaacccaggcacatagaagccaaattagttgca 32918105  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 34311780 - 34311842
Alignment:
Q  98 gttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    |||| |||| |||||||||||| || ||| |||||||||| ||||| |||||| |||||||||    
T  34311780 gttagccaaagcctaaacaagctaaagggtttgaccaccatctctgcgtaccataaacaaaca 34311842  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 34858108 - 34858059
Alignment:
Q  241 ttaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    ||||||| ||||||||||||||| ||||| | |||||| |||||||||||    
T  34858108 ttaaacatacggttattacgttcattccaaacaacccaggcacaaagaag 34858059  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41455812 - 41455759
Alignment:
Q  1 aatagtagctcccaagcacaaggtatgcctagaagaccactacaacaatacaaa 54  Q
    |||||||| |||||||||||| || ||||||| ||||||||||||  |||||||    
T  41455812 aatagtagttcccaagcacaatgtgtgcctaggagaccactacaaatatacaaa 41455759  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 4922946 - 4923002
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcaca 284  Q
    ||||| ||||||||| || || | |||||||||||||||||| ||||||||| ||||    
T  4922946 agttacaacattattgaagagcctgttattacgttcgttccataaaacccaaacaca 4923002  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 17737781 - 17737909
Alignment:
Q  141 ctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaaagatttaatcttatcaagcaacctatgtacatcagttataacatta 240  Q
    |||||| |||||||||||  |||| ||||||||  ||||||||||||| || ||  | ||||| |||||||| || ||| | || || || || |||||     
T  17737781 ctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacattt 17737880  T
Q  241 ttaaacagacggttattacgttcgttcca 269  Q
    ||||||| ||| |||||||| || |||||    
T  17737881 ttaaacaaacgattattacgctcattcca 17737909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 29095038 - 29095002
Alignment:
Q  124 gggcttgaccaccacctctgagtaccaaaaacaaaca 160  Q
    |||||||||||||||||||| |||||| |||||||||    
T  29095038 gggcttgaccaccacctctgcgtaccataaacaaaca 29095002  T

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Target: scaffold0308 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 16241 - 16364
Alignment:
Q  95 gtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaa 194  Q
    ||||||| ||||| |||||||| | ||  || |||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||| |||| || ||    
T  16241 gtggttagccaattcctaaacatgtcataggacttgaccaccacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataa 16340  T
Q  195 agatttaatcttatcaagcaacct 218  Q
      ||||||||||||| | ||||||    
T  16341 caatttaatcttatccaacaacct 16364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 364
Target Start/End: Original strand, 16853 - 16994
Alignment:
Q  223 acatcagttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactt 322  Q
    ||||| |||| ||||||||||| ||| || |||||||||| |||||||| || ||||| ||| | ||  ||||||| ||| |  || ||||  ||| |||    
T  16853 acatccgttacaacattattaagcaggcgattattacgtttgttccacacaatccaagtacacataatccagattagttgtagaaaggaacgtttagctt 16952  T
Q  323 taccaacacctgccatatgaataaactgcaccaaatgatcag 364  Q
    |||||||||||  || || | |||||||||||||||||||||    
T  16953 taccaacacctatcaaataagtaaactgcaccaaatgatcag 16994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 7387 - 7449
Alignment:
Q  228 agttataacattattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaag 290  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||    
T  7387 agttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaag 7449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 72122 - 71997
Alignment:
Q  237 attattaaacagacggttattacgttcgttccacaaaacccaagcacaaagaagtcagattaattgcaagaacgaacacttaactttaccaacacctgcc 336  Q
    |||||| || || ||||| |||||||| |||||||| ||||||| ||| | ||| || || |  |||||||||||||  || |||| |||||||||||||    
T  72122 attattgaatagtcggttgttacgttcattccacaatacccaagaacacaaaagccaaataagctgcaagaacgaactttttacttcaccaacacctgcc 72023  T
Q  337 atatgaataaactgcaccaaatgatc 362  Q
    | |||| | |||||||||| ||||||    
T  72022 aaatgagtgaactgcaccagatgatc 71997  T

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Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 16144 - 16075
Alignment:
Q  114 acaagccaaggggcttgaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccac 183  Q
    |||||| || ||||||||||||||||||||  ||||||||||||||||| | || |||||  ||||||||    
T  16144 acaagctaaagggcttgaccaccacctctgtataccaaaaacaaacatgacattcttagctttcagccac 16075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 135162 - 135098
Alignment:
Q  130 gaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaa 194  Q
    |||||||||  |||||||||||| |||||  | |||||||||||| ||| ||| |||||||||||    
T  135162 gaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaa 135098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 312989 - 312925
Alignment:
Q  130 gaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaa 194  Q
    |||||||||  |||||||||||| |||||  | |||||||||||| ||| ||| |||||||||||    
T  312989 gaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaa 312925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 328443 - 328379
Alignment:
Q  130 gaccaccacctctgagtaccaaaaacaaacatggcttttttagccgtcagccacgctaaggacaa 194  Q
    |||||||||  |||||||||||| |||||  | |||||||||||| ||| ||| |||||||||||    
T  328443 gaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaa 328379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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